coseq
This is thereleased version of coseq; for the devel version, seecoseq.
Co-Expression Analysis of Sequencing Data
Bioconductor version: Release (3.22)
Co-expression analysis for expression profiles arising from high-throughput sequencing data. Feature (e.g., gene) profiles are clustered using adapted transformations and mixture models or a K-means algorithm, and model selection criteria (to choose an appropriate number of clusters) are provided.
Author: Andrea Rau [cre, aut]
ORCID: 0000-0001-6469-488X, Cathy Maugis-Rabusseau [ctb], Antoine Godichon-Baggioni [ctb]
Maintainer: Andrea Rau <andrea.rau at inrae.fr>
citation("coseq")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("coseq")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("coseq")| coseq | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneExpression,ImmunoOncology,RNASeq,Sequencing,Software |
| Version | 1.34.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (8.5 years) |
| License | GPL-3 |
| Depends | R (>= 4.0.0),SummarizedExperiment,S4Vectors |
| Imports | edgeR,DESeq2,capushe,Rmixmod,e1071,BiocParallel,ggplot2,scales,HTSFilter,corrplot,HTSCluster, grDevices, graphics, stats, methods,compositions,mvtnorm |
| System Requirements | |
| URL |
See More
| Suggests | Biobase,knitr,rmarkdown,testthat,BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | RFLOMICS |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | coseq_1.34.0.tar.gz |
| Windows Binary (x86_64) | coseq_1.34.0.zip |
| macOS Binary (x86_64) | coseq_1.34.0.tgz |
| macOS Binary (arm64) | coseq_1.34.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/coseq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/coseq |
| Bioc Package Browser | https://code.bioconductor.org/browse/coseq/ |
| Package Short Url | https://bioconductor.org/packages/coseq/ |
| Package Downloads Report | Download Stats |