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compEpiTools
This is thereleased version of compEpiTools; for the devel version, seecompEpiTools.
Tools for computational epigenomics
Bioconductor version: Release (3.22)
Tools for computational epigenomics developed for the analysis, integration and simultaneous visualization of various (epi)genomics data types across multiple genomic regions in multiple samples.
Author: Mattia Pelizzola [aut], Kamal Kishore [aut], Mattia Furlan [ctb, cre]
Maintainer: Mattia Furlan <mattia.furlan at iit.it>
citation("compEpiTools")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("compEpiTools")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("compEpiTools")| compEpiTools.pdf | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Coverage,GeneExpression,GenomeAnnotation,Sequencing,Software,Visualization |
| Version | 1.44.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (11 years) |
| License | GPL |
| Depends | R (>= 3.5.0), methods,topGO,GenomicRanges |
| Imports | AnnotationDbi,BiocGenerics,Biostrings,Rsamtools, parallel, grDevices,gplots,IRanges,GenomicFeatures,XVector,methylPipe,GO.db,S4Vectors,Seqinfo |
| System Requirements | |
| URL |
See More
| Suggests | BSgenome.Mmusculus.UCSC.mm9,TxDb.Mmusculus.UCSC.mm9.knownGene,org.Mm.eg.db,knitr,rtracklayer |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | compEpiTools_1.44.0.tar.gz |
| Windows Binary (x86_64) | compEpiTools_1.44.0.zip |
| macOS Binary (x86_64) | compEpiTools_1.44.0.tgz |
| macOS Binary (arm64) | compEpiTools_1.44.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/compEpiTools |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/compEpiTools |
| Bioc Package Browser | https://code.bioconductor.org/browse/compEpiTools/ |
| Package Short Url | https://bioconductor.org/packages/compEpiTools/ |
| Package Downloads Report | Download Stats |