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chevreulShiny
This is thereleased version of chevreulShiny; for the devel version, seechevreulShiny.
Tools for managing SingleCellExperiment objects as projects
Bioconductor version: Release (3.22)
Tools for managing SingleCellExperiment objects as projects. Includes functions for analysis and visualization of single-cell data. Also included is a shiny app for visualization of pre-processed scRNA data. Supported by NIH grants R01CA137124 and R01EY026661 to David Cobrinik.
Author: Kevin Stachelek [aut, cre]
ORCID: 0000-0003-2085-695X, Bhavana Bhat [aut]
Maintainer: Kevin Stachelek <kevin.stachelek at gmail.com>
citation("chevreulShiny")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("chevreulShiny")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("chevreulShiny")| Preprocessing | HTML | R Script |
| Shiny App | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Coverage,DataImport,DimensionReduction,GeneExpression,Normalization,Preprocessing,QualityControl,RNASeq,Sequencing,SingleCell,Software,Transcription,Transcriptomics,Visualization |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.21 (R-4.5) (0.5 years) |
| License | MIT + fileLICENSE |
| Depends | R (>= 4.5.0),SingleCellExperiment,shiny (>= 1.6.0),shinydashboard,chevreulProcess,chevreulPlot |
| Imports | alabaster.base,clustree,ComplexHeatmap,DataEditR (>= 0.0.9),DBI,dplyr,DT,EnhancedVolcano,fs,future,ggplot2,ggplotify, grDevices, methods,patchwork,plotly,purrr,rappdirs,readr,RSQLite,S4Vectors,scales,shinyFiles,shinyhelper,shinyjs,shinyWidgets, stats,stringr,tibble,tidyr,tidyselect, utils,waiter,wiggleplotr |
| System Requirements | |
| URL | https://github.com/whtns/chevreulShinyhttps://whtns.github.io/chevreulShiny/ |
| Bug Reports | https://github.com/cobriniklab/chevreulShiny/issues |
See More
| Suggests | BiocStyle,knitr,RefManageR,rmarkdown,testthat (>= 3.0.0),EnsDb.Mmusculus.v79,EnsDb.Hsapiens.v86 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | chevreulShiny_1.2.0.tar.gz |
| Windows Binary (x86_64) | chevreulShiny_1.1.2.zip |
| macOS Binary (x86_64) | chevreulShiny_1.2.0.tgz |
| macOS Binary (arm64) | chevreulShiny_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/chevreulShiny |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/chevreulShiny |
| Bioc Package Browser | https://code.bioconductor.org/browse/chevreulShiny/ |
| Package Short Url | https://bioconductor.org/packages/chevreulShiny/ |
| Package Downloads Report | Download Stats |