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cellxgenedp
This is thereleased version of cellxgenedp; for the devel version, seecellxgenedp.
Discover and Access Single Cell Data Sets in the CELLxGENE Data Portal
Bioconductor version: Release (3.22)
The cellxgene data portal (https://cellxgene.cziscience.com/) provides a graphical user interface to collections of single-cell sequence data processed in standard ways to 'count matrix' summaries. The cellxgenedp package provides an alternative, R-based inteface, allowind data discovery, viewing, and downloading.
Author: Martin Morgan [aut, cre]
ORCID: 0000-0002-5874-8148, Kayla Interdonato [aut]
Maintainer: Martin Morgan <mtmorgan.bioc at gmail.com>
citation("cellxgenedp")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("cellxgenedp")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cellxgenedp")| Case studies | HTML | R Script |
| Discovery and retrieval | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport,SingleCell,Software,ThirdPartyClient |
| Version | 1.14.0 |
| In Bioconductor since | BioC 3.15 (R-4.2) (3.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.1.0),dplyr |
| Imports | httr,curl, utils, tools,cli,shiny,DT,rjsoncons |
| System Requirements | |
| URL | https://mtmorgan.github.io/cellxgenedp/https://github.com/mtmorgan/cellxgenedp |
| Bug Reports | https://github.com/mtmorgan/cellxgenedp/issues |
See More
| Suggests | zellkonverter,SingleCellExperiment,HDF5Array,tidyr,BiocStyle,knitr,rmarkdown,testthat (>= 3.0.0),mockery |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | cellxgenedp_1.14.0.tar.gz |
| Windows Binary (x86_64) | cellxgenedp_1.14.0.zip |
| macOS Binary (x86_64) | cellxgenedp_1.14.0.tgz |
| macOS Binary (arm64) | cellxgenedp_1.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/cellxgenedp |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/cellxgenedp |
| Bioc Package Browser | https://code.bioconductor.org/browse/cellxgenedp/ |
| Package Short Url | https://bioconductor.org/packages/cellxgenedp/ |
| Package Downloads Report | Download Stats |