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breakpointR
This is thereleased version of breakpointR; for the devel version, seebreakpointR.
Find breakpoints in Strand-seq data
Bioconductor version: Release (3.22)
This package implements functions for finding breakpoints, plotting and export of Strand-seq data.
Author: David Porubsky, Ashley Sanders, Aaron Taudt
Maintainer: David Porubsky <david.porubsky at gmail.com>
Citation (from within R, enter
citation("breakpointR")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("breakpointR")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("breakpointR")| How to use breakpointR | R Script | |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Coverage,DNASeq,Sequencing,SingleCell,Software |
| Version | 1.28.0 |
| In Bioconductor since | BioC 3.8 (R-3.5) (7 years) |
| License | fileLICENSE |
| Depends | R (>= 3.5),GenomicRanges,cowplot,breakpointRdata |
| Imports | methods, utils, grDevices, stats,S4Vectors,GenomeInfoDb(>= 1.12.3),IRanges,Rsamtools,GenomicAlignments,ggplot2,BiocGenerics,gtools,doParallel,foreach |
| System Requirements | |
| URL | https://github.com/daewoooo/BreakPointR |
See More
| Suggests | knitr,BiocStyle,testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | breakpointR_1.28.0.tar.gz |
| Windows Binary (x86_64) | breakpointR_1.28.0.zip |
| macOS Binary (x86_64) | breakpointR_1.28.0.tgz |
| macOS Binary (arm64) | breakpointR_1.28.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/breakpointR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/breakpointR |
| Bioc Package Browser | https://code.bioconductor.org/browse/breakpointR/ |
| Package Short Url | https://bioconductor.org/packages/breakpointR/ |
| Package Downloads Report | Download Stats |