borealis
This is thereleased version of borealis; for the devel version, seeborealis.
Bisulfite-seq OutlieR mEthylation At singLe-sIte reSolution
Bioconductor version: Release (3.22)
Borealis is an R library performing outlier analysis for count-based bisulfite sequencing data. It detectes outlier methylated CpG sites from bisulfite sequencing (BS-seq). The core of Borealis is modeling Beta-Binomial distributions. This can be useful for rare disease diagnoses.
Author: Garrett Jenkinson [aut, cre]
ORCID: 0000-0003-2548-098X
Maintainer: Garrett Jenkinson <gargar934 at gmail.com>
citation("borealis")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("borealis")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("borealis")| Borealis outlier methylation detection | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Coverage,DNAMethylation,DifferentialMethylation,Sequencing,Software |
| Version | 1.14.0 |
| In Bioconductor since | BioC 3.15 (R-4.2) (3.5 years) |
| License | GPL-3 |
| Depends | R (>= 4.2.0),Biobase |
| Imports | doParallel,snow,purrr,plyr,foreach,gamlss,gamlss.dist,bsseq, methods,DSS,R.utils, utils, stats,ggplot2,cowplot,dplyr,rlang,GenomicRanges |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle,knitr,rmarkdown,RUnit,BiocGenerics,annotatr,tidyr,TxDb.Hsapiens.UCSC.hg19.knownGene,org.Hs.eg.db |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | borealis_1.14.0.tar.gz |
| Windows Binary (x86_64) | borealis_1.14.0.zip |
| macOS Binary (x86_64) | borealis_1.14.0.tgz |
| macOS Binary (arm64) | borealis_1.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/borealis |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/borealis |
| Bioc Package Browser | https://code.bioconductor.org/browse/borealis/ |
| Package Short Url | https://bioconductor.org/packages/borealis/ |
| Package Downloads Report | Download Stats |