bioCancer
This is thereleased version of bioCancer; for the devel version, seebioCancer.
Interactive Multi-Omics Cancers Data Visualization and Analysis
Bioconductor version: Release (3.22)
This package is a Shiny App to visualize and analyse interactively Multi-Assays of Cancer Genomic Data.
Author: Karim Mezhoud [aut, cre]
Maintainer: Karim Mezhoud <kmezhoud at gmail.com>
Citation (from within R, enter
citation("bioCancer")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("bioCancer")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("bioCancer")| bioCancer: Interactive Multi-OMICS Cancers Data Visualization and Analysis | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataRepresentation,GUI,GeneExpression,GeneTarget,MultipleComparison,Network,Pathways,Reactome,Software,Visualization |
| Version | 1.38.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (9 years) |
| License | AGPL-3 | fileLICENSE |
| Depends | R (>= 4.1.0),radiant.data (>= 0.9.1),cBioPortalData,XML (>= 3.98) |
| Imports | R.oo,R.methodsS3,DT (>= 0.3),dplyr (>= 0.7.2),tidyr,shiny (>= 1.0.5),AlgDesign (>= 1.1.7.3),import (>= 1.1.0), methods,AnnotationDbi,shinythemes,Biobase,geNetClassifier,org.Hs.eg.db,org.Bt.eg.db,DOSE,clusterProfiler,reactome.db,ReactomePA,DiagrammeR (<= 1.01),visNetwork,htmlwidgets,plyr,tibble,GO.db |
| System Requirements | |
| URL | https://kmezhoud.github.io/bioCancer/ |
| Bug Reports | https://github.com/kmezhoud/bioCancer/issues |
See More
| Suggests | BiocStyle,prettydoc,rmarkdown,knitr,testthat (>= 0.10.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | bioCancer_1.38.0.tar.gz |
| Windows Binary (x86_64) | bioCancer_1.38.0.zip |
| macOS Binary (x86_64) | bioCancer_1.38.0.tgz |
| macOS Binary (arm64) | bioCancer_1.38.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/bioCancer |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/bioCancer |
| Bioc Package Browser | https://code.bioconductor.org/browse/bioCancer/ |
| Package Short Url | https://bioconductor.org/packages/bioCancer/ |
| Package Downloads Report | Download Stats |