banocc
This is thereleased version of banocc; for the devel version, seebanocc.
Bayesian ANalysis Of Compositional Covariance
Bioconductor version: Release (3.22)
BAnOCC is a package designed for compositional data, where each sample sums to one. It infers the approximate covariance of the unconstrained data using a Bayesian model coded with `rstan`. It provides as output the `stanfit` object as well as posterior median and credible interval estimates for each correlation element.
Author: Emma Schwager [aut, cre], Curtis Huttenhower [aut]
Maintainer: George Weingart <george.weingart at gmail.com>, Curtis Huttenhower <chuttenh at hsph.harvard.edu>
citation("banocc")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("banocc")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("banocc")| BAnOCC (Bayesian Analysis of Compositional Covariance) | HTML | R Script |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | Bayesian,ImmunoOncology,Metagenomics,Software |
| Version | 1.34.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (8.5 years) |
| License | MIT + fileLICENSE |
| Depends | R (>= 3.5.1),rstan (>= 2.17.4) |
| Imports | coda (>= 0.18.1),mvtnorm,stringr |
| System Requirements | |
| URL |
See More
| Suggests | knitr,rmarkdown, methods,testthat,BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | banocc_1.34.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | banocc_1.34.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/banocc |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/banocc |
| Bioc Package Browser | https://code.bioconductor.org/browse/banocc/ |
| Package Short Url | https://bioconductor.org/packages/banocc/ |
| Package Downloads Report | Download Stats |