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TileDBArray
This is thereleased version of TileDBArray; for the devel version, seeTileDBArray.
Using TileDB as a DelayedArray Backend
Bioconductor version: Release (3.22)
Implements a DelayedArray backend for reading and writing dense or sparse arrays in the TileDB format. The resulting TileDBArrays are compatible with all Bioconductor pipelines that can accept DelayedArray instances.
Author: Aaron Lun [aut, cre], Genentech, Inc. [cph]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
citation("TileDBArray")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("TileDBArray")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TileDBArray")| User guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataRepresentation,Infrastructure,Software |
| Version | 1.20.0 |
| In Bioconductor since | BioC 3.12 (R-4.0) (5 years) |
| License | MIT + fileLICENSE |
| Depends | SparseArray(>= 1.5.20),DelayedArray(>= 0.31.7) |
| Imports | methods,tiledb,S4Vectors |
| System Requirements | |
| URL | https://github.com/LTLA/TileDBArray |
| Bug Reports | https://github.com/LTLA/TileDBArray |
See More
| Suggests | knitr,Matrix,rmarkdown,BiocStyle,BiocParallel,testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | beachmat.tiledb |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | TileDBArray_1.20.0.tar.gz |
| Windows Binary (x86_64) | TileDBArray_1.20.0.zip |
| macOS Binary (x86_64) | TileDBArray_1.20.0.tgz |
| macOS Binary (arm64) | TileDBArray_1.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TileDBArray |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TileDBArray |
| Bioc Package Browser | https://code.bioconductor.org/browse/TileDBArray/ |
| Package Short Url | https://bioconductor.org/packages/TileDBArray/ |
| Package Downloads Report | Download Stats |