TCseq
This is thereleased version of TCseq; for the devel version, seeTCseq.
Time course sequencing data analysis
Bioconductor version: Release (3.22)
Quantitative and differential analysis of epigenomic and transcriptomic time course sequencing data, clustering analysis and visualization of the temporal patterns of time course data.
Author: Mengjun Wu <minervajunjun at gmail.com>, Lei Gu <leigu at broadinstitute.org>
Maintainer: Mengjun Wu <minervajunjun at gmail.com>
Citation (from within R, enter
citation("TCseq")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("TCseq")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TCseq")| TCseq Vignette | R Script | |
| Reference Manual |
Details
| biocViews | ChIPSeq,Clustering,DifferentialExpression,Epigenetics,RNASeq,Sequencing,Software,TimeCourse,Visualization |
| Version | 1.34.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (8.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.4) |
| Imports | edgeR,BiocGenerics,reshape2,GenomicRanges,IRanges,SummarizedExperiment,GenomicAlignments,Rsamtools,e1071,cluster,ggplot2, grid, grDevices, stats, utils, methods,locfit |
| System Requirements | |
| URL |
See More
| Suggests | testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | ClusterGVis |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | TCseq_1.34.0.tar.gz |
| Windows Binary (x86_64) | TCseq_1.34.0.zip |
| macOS Binary (x86_64) | TCseq_1.34.0.tgz |
| macOS Binary (arm64) | TCseq_1.34.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TCseq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TCseq |
| Bioc Package Browser | https://code.bioconductor.org/browse/TCseq/ |
| Package Short Url | https://bioconductor.org/packages/TCseq/ |
| Package Downloads Report | Download Stats |