Streamer
This package isdeprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.22 of Bioconductor.This package has been removed from Bioconductor.For the last stable, up-to-date release version, seeStreamer.
Enabling stream processing of large files
Bioconductor version: Release (3.22)
Large data files can be difficult to work with in R, where data generally resides in memory. This package encourages a style of programming where data is 'streamed' from disk into R via a `producer' and through a series of `consumers' that, typically reduce the original data to a manageable size. The package provides useful Producer and Consumer stream components for operations such as data input, sampling, indexing, and transformation; see package?Streamer for details.
Author: Martin Morgan, Nishant Gopalakrishnan
Maintainer: Martin Morgan <martin.morgan at roswellpark.org>
citation("Streamer")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("Streamer")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Streamer")| Streamer: A simple example | R Script | |
| Reference Manual |
Details
| biocViews | DataImport,Infrastructure,Software |
| Version | 1.56.0 |
| In Bioconductor since | BioC 2.9 (R-2.14) (14 years) |
| License | Artistic-2.0 |
| Depends | |
| Imports | methods,graph,RBGL, parallel,BiocGenerics |
| System Requirements | |
| URL |
See More
| Suggests | RUnit,Rsamtools(>= 1.5.53),GenomicAlignments,Rgraphviz |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | Streamer_1.56.0.tar.gz |
| Windows Binary (x86_64) | Streamer_1.56.0.zip |
| macOS Binary (x86_64) | Streamer_1.56.0.tgz |
| macOS Binary (arm64) | Streamer_1.56.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Streamer |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Streamer |
| Package Short Url | https://bioconductor.org/packages/Streamer/ |
| Package Downloads Report | Download Stats |