STRINGdb

This is thereleased version of STRINGdb; for the devel version, seeSTRINGdb.

STRINGdb - Protein-Protein Interaction Networks and Functional Enrichment Analysis

Bioconductor version: Release (3.22)

The STRINGdb package provides a R interface to the STRING protein-protein interactions database (https://string-db.org).

Author: Andrea Franceschini <andrea.franceschini at isb-sib.ch>

Maintainer: Damian Szklarczyk <damian.szklarczyk at imls.uzh.ch>

Citation (from within R, entercitation("STRINGdb")):

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))    install.packages("BiocManager")BiocManager::install("STRINGdb")

For older versions of R, please refer to the appropriateBioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("STRINGdb")

STRINGdb Vignette	PDF	R Script
Reference Manual	PDF

biocViews	Network,Software
Version	2.22.0
In Bioconductor since	BioC 2.13 (R-3.0) (12 years)
License	GPL-2
Depends	R (>= 2.14.0)
Imports	png,sqldf,plyr,igraph,httr, methods,RColorBrewer,gplots,hash,plotrix
System Requirements
URL

Suggests	RUnit,BiocGenerics
Linking To
Enhances
Depends On Me	PPInfer
Imports Me	GeDi,IMMAN,RITAN,TDbasedUFEadv,XINA,DeSciDe
Suggests Me	epiNEM,GeneNetworkBuilder,martini,netSmooth,PCAN,scGraphVerse,protti
Links To Me
Build Report	Build Report

FollowInstallation instructions to use this package in your R session.

Source Package	STRINGdb_2.22.0.tar.gz
Windows Binary (x86_64)	STRINGdb_2.22.0.zip (64-bit only)
macOS Binary (x86_64)	STRINGdb_2.22.0.tgz
macOS Binary (arm64)	STRINGdb_2.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/STRINGdb
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/STRINGdb
Bioc Package Browser	https://code.bioconductor.org/browse/STRINGdb/
Package Short Url	https://bioconductor.org/packages/STRINGdb/
Package Downloads Report	Download Stats