SEtools
This is thereleased version of SEtools; for the devel version, seeSEtools.
SEtools: tools for working with SummarizedExperiment
Bioconductor version: Release (3.22)
This includes a set of convenience functions for working with the SummarizedExperiment class. Note that plotting functions historically in this package have been moved to the sechm package (see vignette for details).
Author: Pierre-Luc Germain [cre, aut]
ORCID: 0000-0003-3418-4218
Maintainer: Pierre-Luc Germain <pierre-luc.germain at hest.ethz.ch>
citation("SEtools")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("SEtools")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SEtools")| SEtools | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneExpression,Software |
| Version | 1.24.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (6 years) |
| License | GPL |
| Depends | R (>= 4.0),SummarizedExperiment,sechm |
| Imports | BiocParallel,Matrix,DESeq2,S4Vectors,data.table,edgeR,openxlsx,pheatmap, stats,circlize, methods,sva |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/plger/SEtools |
See More
| Suggests | BiocStyle,knitr,rmarkdown,ggplot2 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | SEtools_1.24.0.tar.gz |
| Windows Binary (x86_64) | SEtools_1.24.0.zip |
| macOS Binary (x86_64) | SEtools_1.24.0.tgz |
| macOS Binary (arm64) | SEtools_1.24.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/SEtools |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SEtools |
| Bioc Package Browser | https://code.bioconductor.org/browse/SEtools/ |
| Package Short Url | https://bioconductor.org/packages/SEtools/ |
| Package Downloads Report | Download Stats |