Rvisdiff
This is thereleased version of Rvisdiff; for the devel version, seeRvisdiff.
Interactive Graphs for Differential Expression
Bioconductor version: Release (3.22)
Creates a muti-graph web page which allows the interactive exploration of differential analysis tests. The graphical web interface presents results as a table which is integrated with five interactive graphs: MA-plot, volcano plot, box plot, lines plot and cluster heatmap. Graphical aspect and information represented in the graphs can be customized by means of user controls. Final graphics can be exported as PNG format.
Author: Carlos Prieto [aut]
ORCID: 0000-0003-2064-4842, David Barrios [cre, aut] ORCID: 0000-0003-4465-0200
Maintainer: David Barrios <metal at usal.es>
citation("Rvisdiff")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("Rvisdiff")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rvisdiff")| Visualize Differential Expression results | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataRepresentation,DifferentialExpression,RNASeq,Software,Visualization |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.18 (R-4.3) (2 years) |
| License | GPL-2 | GPL-3 |
| Depends | R (>= 4.5.0) |
| Imports | edgeR, utils |
| System Requirements | |
| URL | https://github.com/BioinfoUSAL/Rvisdiff/ |
| Bug Reports | https://github.com/BioinfoUSAL/Rvisdiff/issues/ |
See More
| Suggests | knitr,rmarkdown,DESeq2,limma,SummarizedExperiment,airway,BiocStyle,matrixTests,BiocManager |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | Rvisdiff_1.8.0.tar.gz |
| Windows Binary (x86_64) | Rvisdiff_1.8.0.zip (64-bit only) |
| macOS Binary (x86_64) | Rvisdiff_1.8.0.tgz |
| macOS Binary (arm64) | Rvisdiff_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Rvisdiff |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Rvisdiff |
| Bioc Package Browser | https://code.bioconductor.org/browse/Rvisdiff/ |
| Package Short Url | https://bioconductor.org/packages/Rvisdiff/ |
| Package Downloads Report | Download Stats |