Rqc
This is thereleased version of Rqc; for the devel version, seeRqc.
Quality Control Tool for High-Throughput Sequencing Data
DOI: 10.18129/B9.bioc.Rqc
Bioconductor version: Release (3.22)
Rqc is an optimised tool designed for quality control and assessment of high-throughput sequencing data. It performs parallel processing of entire files and produces a report which contains a set of high-resolution graphics.
Author: Welliton Souza, Benilton Carvalho <beniltoncarvalho at gmail.com>
Maintainer: Welliton Souza <well309 at gmail.com>
citation("Rqc")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("Rqc")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rqc")| Using Rqc | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport,QualityControl,Sequencing,Software |
| Version | 1.44.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (11 years) |
| License | GPL (>= 2) |
| Depends | BiocParallel,ShortRead,ggplot2 |
| Imports | BiocGenerics(>= 0.25.1),Biostrings,IRanges, methods,S4Vectors,knitr (>= 1.7),BiocStyle,plyr,markdown, grid,reshape2,Rcpp (>= 0.11.6),biovizBase,shiny,Rsamtools,GenomicAlignments,GenomicFiles |
| System Requirements | |
| URL | https://github.com/labbcb/Rqc |
| Bug Reports | https://github.com/labbcb/Rqc/issues |
See More
| Suggests | rmarkdown,testthat |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | Rqc_1.44.0.tar.gz |
| Windows Binary (x86_64) | Rqc_1.44.0.zip (64-bit only) |
| macOS Binary (x86_64) | Rqc_1.44.0.tgz |
| macOS Binary (arm64) | Rqc_1.44.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Rqc |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Rqc |
| Bioc Package Browser | https://code.bioconductor.org/browse/Rqc/ |
| Package Short Url | https://bioconductor.org/packages/Rqc/ |
| Package Downloads Report | Download Stats |