PROPS
This is thereleased version of PROPS; for the devel version, seePROPS.
PRObabilistic Pathway Score (PROPS)
Bioconductor version: Release (3.22)
This package calculates probabilistic pathway scores using gene expression data. Gene expression values are aggregated into pathway-based scores using Bayesian network representations of biological pathways.
Author: Lichy Han
Maintainer: Lichy Han <lhan2 at stanford.edu>
Citation (from within R, enter
citation("PROPS")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("PROPS")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PROPS")| PRObabilistic Pathway Scores (PROPS) | HTML | R Script |
| Reference Manual |
Details
| biocViews | Bayesian,Classification,GeneExpression,Software |
| Version | 1.32.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (8 years) |
| License | GPL-2 |
| Depends | |
| Imports | bnlearn,reshape2,sva, stats, utils,Biobase |
| System Requirements | |
| URL |
See More
| Suggests | knitr,rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | PROPS_1.32.0.tar.gz |
| Windows Binary (x86_64) | PROPS_1.32.0.zip |
| macOS Binary (x86_64) | PROPS_1.32.0.tgz |
| macOS Binary (arm64) | PROPS_1.32.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/PROPS |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/PROPS |
| Bioc Package Browser | https://code.bioconductor.org/browse/PROPS/ |
| Package Short Url | https://bioconductor.org/packages/PROPS/ |
| Package Downloads Report | Download Stats |