OVESEG
This is thereleased version of OVESEG; for the devel version, seeOVESEG.
OVESEG-test to detect tissue/cell-specific markers
Bioconductor version: Release (3.22)
An R package for multiple-group comparison to detect tissue/cell-specific marker genes among subtypes. It provides functions to compute OVESEG-test statistics, derive component weights in the mixture null distribution model and estimate p-values from weightedly aggregated permutations. Obtained posterior probabilities of component null hypotheses can also portrait all kinds of upregulation patterns among subtypes.
Author: Lulu Chen <luluchen at vt.edu>
Maintainer: Lulu Chen <luluchen at vt.edu>
citation("OVESEG")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("OVESEG")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OVESEG")| OVESEG User Manual | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CellBiology,GeneExpression,MultipleComparison,Software |
| Version | 1.26.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (6.5 years) |
| License | GPL-2 |
| Depends | R (>= 3.6) |
| Imports | stats, utils, methods,BiocParallel,SummarizedExperiment,limma,fdrtool,Rcpp |
| System Requirements | C++11 |
| URL | |
| Bug Reports | https://github.com/Lululuella/OVESEG |
See More
| Suggests | knitr,rmarkdown,BiocStyle,testthat,ggplot2,gridExtra, grid,reshape2,scales |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | OVESEG_1.26.0.tar.gz |
| Windows Binary (x86_64) | OVESEG_1.26.0.zip |
| macOS Binary (x86_64) | OVESEG_1.26.0.tgz |
| macOS Binary (arm64) | OVESEG_1.26.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/OVESEG |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/OVESEG |
| Bioc Package Browser | https://code.bioconductor.org/browse/OVESEG/ |
| Package Short Url | https://bioconductor.org/packages/OVESEG/ |
| Package Downloads Report | Download Stats |