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MinimumDistance
This is thereleased version of MinimumDistance; for the devel version, seeMinimumDistance.
A Package for De Novo CNV Detection in Case-Parent Trios
Bioconductor version: Release (3.22)
Analysis of de novo copy number variants in trios from high-dimensional genotyping platforms.
Author: Robert B Scharpf and Ingo Ruczinski
Maintainer: Robert Scharpf <rscharpf at jhu.edu>
Citation (from within R, enter
citation("MinimumDistance")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("MinimumDistance")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MinimumDistance")| Detection of de novo copy number alterations in case-parent trios | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CopyNumberVariation,Microarray,SNP,Software |
| Version | 1.54.0 |
| In Bioconductor since | BioC 2.10 (R-2.15) (13.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5.0),VanillaICE(>= 1.47.1) |
| Imports | methods,BiocGenerics,MatrixGenerics,Biobase,S4Vectors(>= 0.23.18),IRanges,Seqinfo,GenomicRanges(>= 1.17.16),SummarizedExperiment(>= 1.15.4),oligoClasses,DNAcopy,ff,foreach,matrixStats,lattice,data.table, grid, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | human610quadv1bCrlmm(>= 1.0.3),BSgenome.Hsapiens.UCSC.hg18,BSgenome.Hsapiens.UCSC.hg19,RUnit |
| Linking To | |
| Enhances | snow,doSNOW |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | MinimumDistance_1.54.0.tar.gz |
| Windows Binary (x86_64) | MinimumDistance_1.54.0.zip |
| macOS Binary (x86_64) | MinimumDistance_1.54.0.tgz |
| macOS Binary (arm64) | MinimumDistance_1.54.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MinimumDistance |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MinimumDistance |
| Bioc Package Browser | https://code.bioconductor.org/browse/MinimumDistance/ |
| Package Short Url | https://bioconductor.org/packages/MinimumDistance/ |
| Package Downloads Report | Download Stats |