MethTargetedNGS

This is thereleased version of MethTargetedNGS; for the devel version, seeMethTargetedNGS.

Perform Methylation Analysis on Next Generation Sequencing Data

Bioconductor version: Release (3.22)

Perform step by step methylation analysis of Next Generation Sequencing data.

Author: Muhammad Ahmer Jamil with Contribution of Prof. Holger Frohlich and Priv.-Doz. Dr. Osman El-Maarri

Maintainer: Muhammad Ahmer Jamil <engr.ahmerjamil at gmail.com>

Citation (from within R, entercitation("MethTargetedNGS")):

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))    install.packages("BiocManager")BiocManager::install("MethTargetedNGS")

For older versions of R, please refer to the appropriateBioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MethTargetedNGS")

Introduction to MethTargetedNGS	PDF	R Script
Reference Manual	PDF

biocViews	Alignment,DataImport,Genetics,ResearchField,SequenceMatching,Sequencing,Software
Version	1.42.0
In Bioconductor since	BioC 3.1 (R-3.2) (10.5 years)
License	Artistic-2.0
Depends	R (>= 3.1.2),stringr,seqinr,gplots,Biostrings,pwalign
Imports	utils, graphics, stats
System Requirements	HMMER3
URL

FollowInstallation instructions to use this package in your R session.

Source Package	MethTargetedNGS_1.42.0.tar.gz
Windows Binary (x86_64)	MethTargetedNGS_1.42.0.zip
macOS Binary (x86_64)	MethTargetedNGS_1.42.0.tgz
macOS Binary (arm64)	MethTargetedNGS_1.42.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MethTargetedNGS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MethTargetedNGS
Bioc Package Browser	https://code.bioconductor.org/browse/MethTargetedNGS/
Package Short Url	https://bioconductor.org/packages/MethTargetedNGS/
Package Downloads Report	Download Stats