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MSstatsConvert
This is thereleased version of MSstatsConvert; for the devel version, seeMSstatsConvert.
Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats Format
Bioconductor version: Release (3.22)
MSstatsConvert provides tools for importing reports of Mass Spectrometry data processing tools into R format suitable for statistical analysis using the MSstats and MSstatsTMT packages.
Author: Mateusz Staniak [aut, cre], Devon Kohler [aut], Anthony Wu [aut], Meena Choi [aut], Ting Huang [aut], Olga Vitek [aut]
Maintainer: Mateusz Staniak <mtst at mstaniak.pl>
citation("MSstatsConvert")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("MSstatsConvert")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MSstatsConvert")| Working with MSstatsConvert | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport,MassSpectrometry,Proteomics,QualityControl,Software |
| Version | 1.20.0 |
| In Bioconductor since | BioC 3.12 (R-4.0) (5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.0) |
| Imports | data.table,log4r, methods,checkmate, utils,stringi,Rcpp, parallel |
| System Requirements | |
| URL |
See More
| Suggests | tinytest,covr,knitr,arrow,rmarkdown |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | MSstats,MSstatsBig,MSstatsLiP,MSstatsPTM,MSstatsShiny,MSstatsTMT |
| Suggests Me | MSstatsBioNet |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | MSstatsConvert_1.20.0.tar.gz |
| Windows Binary (x86_64) | MSstatsConvert_1.20.0.zip |
| macOS Binary (x86_64) | MSstatsConvert_1.20.0.tgz |
| macOS Binary (arm64) | MSstatsConvert_1.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MSstatsConvert |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MSstatsConvert |
| Bioc Package Browser | https://code.bioconductor.org/browse/MSstatsConvert/ |
| Package Short Url | https://bioconductor.org/packages/MSstatsConvert/ |
| Package Downloads Report | Download Stats |