MOSClip
This is thereleased version of MOSClip; for the devel version, seeMOSClip.
Multi Omics Survival Clip
Bioconductor version: Release (3.22)
Topological pathway analysis tool able to integrate multi-omics data. It finds survival-associated modules or significant modules for two-class analysis. This tool have two main methods: pathway tests and module tests. The latter method allows the user to dig inside the pathways itself.
Author: Paolo Martini [aut, cre]
ORCID: 0000-0002-0146-1031, Anna Bortolato [aut] ORCID: 0009-0009-9327-6084, Anna Tanada [aut] ORCID: 0000-0003-3224-0538, Enrica Calura [aut] ORCID: 0000-0001-8463-2432, Stefania Pirrotta [aut] ORCID: 0009-0004-0030-217X, Federico Agostinis [aut]
Maintainer: Paolo Martini <paolo.martini at unibs.it>
citation("MOSClip")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("MOSClip")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MOSClip")| MOSClip | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DimensionReduction,GraphAndNetwork,Pathways,Reactome,Regression,Software,StatisticalMethod,Survival |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.20 (R-4.4) (1 year) |
| License | AGPL-3 |
| Depends | R (>= 4.4.0) |
| Imports | MultiAssayExperiment, methods,survminer,graph,graphite,AnnotationDbi,checkmate,ggplot2,gridExtra,igraph,pheatmap,survival,RColorBrewer,SuperExactTest,reshape,NbClust,S4Vectors, grDevices, graphics, stats, utils,ComplexHeatmap,FactoMineR,circlize,corpcor,coxrobust,elasticnet,gRbase,ggplotify,qpgraph,org.Hs.eg.db,Matrix |
| System Requirements | |
| URL | https://github.com/CaluraLab/MOSClip/ |
| Bug Reports | https://github.com/CaluraLab/MOSClip/issues |
See More
| Suggests | RUnit,BiocGenerics,MASS,BiocStyle,knitr,EDASeq,rmarkdown,kableExtra,testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | MOSClip_1.4.0.tar.gz |
| Windows Binary (x86_64) | MOSClip_1.4.0.zip (64-bit only) |
| macOS Binary (x86_64) | MOSClip_1.4.0.tgz |
| macOS Binary (arm64) | MOSClip_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MOSClip |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MOSClip |
| Bioc Package Browser | https://code.bioconductor.org/browse/MOSClip/ |
| Package Short Url | https://bioconductor.org/packages/MOSClip/ |
| Package Downloads Report | Download Stats |