MACSr
This is thereleased version of MACSr; for the devel version, seeMACSr.
MACS: Model-based Analysis for ChIP-Seq
Bioconductor version: Release (3.22)
The Model-based Analysis of ChIP-Seq (MACS) is a widely used toolkit for identifying transcript factor binding sites. This package is an R wrapper of the lastest MACS3.
Author: Philippa Doherty [aut], Qiang Hu [aut, cre]
Maintainer: Qiang Hu <Qiang.Hu at roswellpark.org>
Citation (from within R, enter
citation("MACSr")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("MACSr")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MACSr")| MACSr | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | ATACSeq,ChIPSeq,ImmunoOncology,Software |
| Version | 1.18.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (4.5 years) |
| License | BSD_3_clause + fileLICENSE |
| Depends | R (>= 4.1.0) |
| Imports | utils,reticulate,S4Vectors, methods,basilisk,ExperimentHub,AnnotationHub |
| System Requirements | |
| URL |
See More
| Suggests | testthat,knitr,rmarkdown,BiocStyle,MACSdata |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | MACSr_1.18.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | MACSr_1.18.0.tgz |
| macOS Binary (arm64) | MACSr_1.18.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MACSr |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MACSr |
| Bioc Package Browser | https://code.bioconductor.org/browse/MACSr/ |
| Package Short Url | https://bioconductor.org/packages/MACSr/ |
| Package Downloads Report | Download Stats |