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InteractiveComplexHeatmap
This is thereleased version of InteractiveComplexHeatmap; for the devel version, seeInteractiveComplexHeatmap.
Make Interactive Complex Heatmaps
Bioconductor version: Release (3.22)
This package can easily make heatmaps which are produced by the ComplexHeatmap package into interactive applications. It provides two types of interactivities: 1. on the interactive graphics device, and 2. on a Shiny app. It also provides functions for integrating the interactive heatmap widgets for more complex Shiny app development.
Author: Zuguang Gu [aut, cre]
ORCID: 0000-0002-7395-8709
Maintainer: Zuguang Gu <z.gu at dkfz.de>
citation("InteractiveComplexHeatmap")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("InteractiveComplexHeatmap")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("InteractiveComplexHeatmap")| 1. How to visualize heatmaps interactively | HTML | R Script |
| 2. How interactive complex heatmap is implemented | HTML | R Script |
| 3. Functions for Shiny app development | HTML | R Script |
| 4. Decorations on heatmaps | HTML | R Script |
| 5. Interactivate heatmaps indirectly generated by pheatmap(), heatmap.2() and heatmap() | HTML | R Script |
| 6. A Shiny app for visualizing DESeq2 results | HTML | R Script |
| 7. Implement interactive heatmap from scratch | HTML | R Script |
| 8. Share interactive heatmaps to collaborators | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Sequencing,Software,Visualization |
| Version | 1.18.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (4.5 years) |
| License | MIT + fileLICENSE |
| Depends | R (>= 4.0.0),ComplexHeatmap(>= 2.11.0) |
| Imports | grDevices, stats,shiny, grid,GetoptLong,S4Vectors(>= 0.26.1),digest,IRanges,kableExtra (>= 1.3.1), utils,svglite,htmltools,clisymbols,jsonlite,RColorBrewer,fontawesome |
| System Requirements | |
| URL | https://github.com/jokergoo/InteractiveComplexHeatmap |
| Bug Reports | https://github.com/jokergoo/InteractiveComplexHeatmap/issues |
See More
| Suggests | knitr,rmarkdown,testthat,EnrichedHeatmap,GenomicRanges,data.table,circlize,GenomicFeatures,tidyverse,tidyHeatmap,cluster,org.Hs.eg.db,simplifyEnrichment,GO.db,SC3,GOexpress,SingleCellExperiment,scater,gplots,pheatmap,airway,DESeq2,DT,cola,BiocManager,gridtext,HilbertCurve(>= 1.21.1),shinydashboard,SummarizedExperiment,pkgndep,ks |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | mineSweepR |
| Suggests Me | CTexploreR,simona,simplifyEnrichment,metasnf |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | InteractiveComplexHeatmap_1.18.0.tar.gz |
| Windows Binary (x86_64) | InteractiveComplexHeatmap_1.18.0.zip (64-bit only) |
| macOS Binary (x86_64) | InteractiveComplexHeatmap_1.18.0.tgz |
| macOS Binary (arm64) | InteractiveComplexHeatmap_1.18.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/InteractiveComplexHeatmap |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/InteractiveComplexHeatmap |
| Bioc Package Browser | https://code.bioconductor.org/browse/InteractiveComplexHeatmap/ |
| Package Short Url | https://bioconductor.org/packages/InteractiveComplexHeatmap/ |
| Package Downloads Report | Download Stats |