HuBMAPR
This is thereleased version of HuBMAPR; for the devel version, seeHuBMAPR.
Interface to 'HuBMAP'
Bioconductor version: Release (3.22)
'HuBMAP' provides an open, global bio-molecular atlas of the human body at the cellular level. The `datasets()`, `samples()`, `donors()`, `publications()`, and `collections()` functions retrieves the information for each of these entity types. `*_details()` are available for individual entries of each entity type. `*_derived()` are available for retrieving derived datasets or samples for individual entries of each entity type. Data files can be accessed using `bulk_data_transfer()`.
Author: Christine Hou [aut, cre]
ORCID: 0009-0001-5350-0629, Martin Morgan [aut] ORCID: 0000-0002-5874-8148, Federico Marini [aut] ORCID: 0000-0003-3252-7758
Maintainer: Christine Hou <chris2018hou at gmail.com>
citation("HuBMAPR")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("HuBMAPR")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HuBMAPR")| Accessing Human Cell Atlas Data | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport,Infrastructure,SingleCell,Software,Spatial,ThirdPartyClient |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.20 (R-4.4) (1 year) |
| License | Artistic-2.0 |
| Depends | R (>= 4.4.0) |
| Imports | httr2,dplyr,tidyr,tibble,rjsoncons, utils,stringr,whisker,purrr,rlang |
| System Requirements | |
| URL | https://christinehou11.github.io/HuBMAPR/https://github.com/christinehou11/HuBMAPR |
| Bug Reports | https://github.com/christinehou11/HuBMAPR/issues |
See More
| Suggests | testthat (>= 3.0.0),knitr,ggplot2,rmarkdown,BiocStyle,pryr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | HuBMAPR_1.4.0.tar.gz |
| Windows Binary (x86_64) | HuBMAPR_1.4.0.zip |
| macOS Binary (x86_64) | HuBMAPR_1.4.0.tgz |
| macOS Binary (arm64) | HuBMAPR_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/HuBMAPR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/HuBMAPR |
| Bioc Package Browser | https://code.bioconductor.org/browse/HuBMAPR/ |
| Package Short Url | https://bioconductor.org/packages/HuBMAPR/ |
| Package Downloads Report | Download Stats |