GmicR
This is thereleased version of GmicR; for the devel version, seeGmicR.
Combines WGCNA and xCell readouts with bayesian network learrning to generate a Gene-Module Immune-Cell network (GMIC)
Bioconductor version: Release (3.22)
This package uses bayesian network learning to detect relationships between Gene Modules detected by WGCNA and immune cell signatures defined by xCell. It is a hypothesis generating tool.
Author: Richard Virgen-Slane
Maintainer: Richard Virgen-Slane <RVS.BioTools at gmail.com>
Citation (from within R, enter
citation("GmicR")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("GmicR")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GmicR")| GmicR_vignette | HTML | R Script |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | Bayesian,Clustering,GUI,GeneExpression,GraphAndNetwork,ImmunoOncology,Network,NetworkInference,QualityControl,Software,SystemsBiology |
| Version | 1.24.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (6 years) |
| License | GPL-2 + fileLICENSE |
| Depends | |
| Imports | AnnotationDbi,ape,bnlearn,Category,DT,doParallel,foreach,gRbase,GSEABase,gRain,GOstats,org.Hs.eg.db,org.Mm.eg.db,shiny,WGCNA,data.table, grDevices, graphics,reshape2, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | knitr,rmarkdown,testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | GmicR_1.24.0.tar.gz |
| Windows Binary (x86_64) | GmicR_1.24.0.zip |
| macOS Binary (x86_64) | GmicR_1.24.0.tgz |
| macOS Binary (arm64) | GmicR_1.24.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GmicR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GmicR |
| Bioc Package Browser | https://code.bioconductor.org/browse/GmicR/ |
| Package Short Url | https://bioconductor.org/packages/GmicR/ |
| Package Downloads Report | Download Stats |