GloScope
This is thereleased version of GloScope; for the devel version, seeGloScope.
Population-level Representation on scRNA-Seq data
Bioconductor version: Release (3.22)
This package aims at representing and summarizing the entire single-cell profile of a sample. It allows researchers to perform important bioinformatic analyses at the sample-level such as visualization and quality control. The main functions Estimate sample distribution and calculate statistical divergence among samples, and visualize the distance matrix through MDS plots.
Author: Elizabeth Purdom [aut, cre], William Torous [aut]
ORCID: 0000-0001-5668-5510, Hao Wang [aut] ORCID: 0000-0002-0749-474X, Boying Gong [aut]
Maintainer: Elizabeth Purdom <epurdom at stat.berkeley.edu>
citation("GloScope")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("GloScope")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GloScope")| GloScope | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataRepresentation,QualityControl,RNASeq,Sequencing,SingleCell,Software |
| Version | 2.0.1 |
| In Bioconductor since | BioC 3.18 (R-4.3) (2 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.4.0) |
| Imports | utils, stats,MASS,mclust,ggplot2,RANN,FNN,BiocParallel,mvnfast,SingleCellExperiment,rlang,RColorBrewer,pheatmap,vegan,cluster,boot,permute |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/epurdom/GloScope/issues |
See More
| Suggests | BiocStyle,testthat (>= 3.0.0),knitr,rmarkdown,zellkonverter |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | GloScope_2.0.1.tar.gz |
| Windows Binary (x86_64) | GloScope_1.7.1.zip |
| macOS Binary (x86_64) | GloScope_2.0.1.tgz |
| macOS Binary (arm64) | GloScope_2.0.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GloScope |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GloScope |
| Bioc Package Browser | https://code.bioconductor.org/browse/GloScope/ |
| Package Short Url | https://bioconductor.org/packages/GloScope/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.22 | Source Archive |