GSEABase
This is thereleased version of GSEABase; for the devel version, seeGSEABase.
Gene set enrichment data structures and methods
Bioconductor version: Release (3.22)
This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).
Author: Martin Morgan [aut], Seth Falcon [aut], Robert Gentleman [aut], Paul Villafuerte [ctb] ('GSEABase' vignette translation from Sweave to Rmarkdown / HTML), Bioconductor Package Maintainer [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("GSEABase")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("GSEABase")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GSEABase")| An introduction to GSEABase | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GO,GeneExpression,GeneSetEnrichment,GraphAndNetwork,KEGG,Software |
| Version | 1.72.0 |
| In Bioconductor since | BioC 2.1 (R-2.6) (18 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.6.0),BiocGenerics(>= 0.13.8),Biobase(>= 2.17.8),annotate(>= 1.45.3), methods,graph(>= 1.37.2) |
| Imports | AnnotationDbi,XML |
| System Requirements | |
| URL |
See More
| Suggests | hgu95av2.db,GO.db,org.Hs.eg.db,Rgraphviz,ReportingTools,testthat,BiocStyle,knitr,RUnit |
| Linking To | |
| Enhances | |
| Depends On Me | AGDEX,BicARE,CCPROMISE,Cepo,cpvSNP,npGSEA,PROMISE,splineTimeR,TissueEnrich,GSVAdata, OSCA.basic |
| Imports Me | AUCell,BioCor,canceR,Category,categoryCompare,cosmosR,dreamlet,EnrichmentBrowser,gep2pep,GlobalAncova,GmicR,GSRI,GSVA,mastR,miRSM,mogsa,oppar,PanomiR,phenoTest,PROMISE,RcisTarget,ReportingTools,scTGIF,signatureSearch,singleCellTK,singscore,slalom,sparrow,TFutils,TMSig,vissE,zenith,msigdb,clustermole |
| Suggests Me | BiocSet,epiregulon.extra,escape,gage,globaltest,GOstats,GSAR,MAST,pathMED,phenoTest,BaseSet,evanverse |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | GSEABase_1.72.0.tar.gz |
| Windows Binary (x86_64) | GSEABase_1.72.0.zip |
| macOS Binary (x86_64) | GSEABase_1.72.0.tgz |
| macOS Binary (arm64) | GSEABase_1.72.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GSEABase |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GSEABase |
| Bioc Package Browser | https://code.bioconductor.org/browse/GSEABase/ |
| Package Short Url | https://bioconductor.org/packages/GSEABase/ |
| Package Downloads Report | Download Stats |