GPA
This is thereleased version of GPA; for the devel version, seeGPA.
GPA (Genetic analysis incorporating Pleiotropy and Annotation)
DOI: 10.18129/B9.bioc.GPA
Bioconductor version: Release (3.22)
This package provides functions for fitting GPA, a statistical framework to prioritize GWAS results by integrating pleiotropy information and annotation data. In addition, it also includes ShinyGPA, an interactive visualization toolkit to investigate pleiotropic architecture.
Author: Dongjun Chung, Emma Kortemeier, Carter Allen
Maintainer: Dongjun Chung <dongjun.chung at gmail.com>
citation("GPA")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("GPA")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GPA")| GPA | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Classification,Clustering,DifferentialExpression,GeneExpression,Genetics,GenomeWideAssociation,MultipleComparison,Preprocessing,SNP,Software,StatisticalMethod |
| Version | 1.22.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (5.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 4.0.0), methods, graphics,Rcpp |
| Imports | parallel,ggplot2,ggrepel,plyr,vegan,DT,shiny,shinyBS, stats, utils, grDevices |
| System Requirements | GNU make |
| URL | http://dongjunchung.github.io/GPA/ |
| Bug Reports | https://github.com/dongjunchung/GPA/issues |
See More
| Suggests | gpaExample |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | GPA_1.22.0.tar.gz |
| Windows Binary (x86_64) | GPA_1.22.0.zip |
| macOS Binary (x86_64) | GPA_1.22.0.tgz |
| macOS Binary (arm64) | GPA_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GPA |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GPA |
| Bioc Package Browser | https://code.bioconductor.org/browse/GPA/ |
| Package Short Url | https://bioconductor.org/packages/GPA/ |
| Package Downloads Report | Download Stats |