GENIE3

This is thereleased version of GENIE3; for the devel version, seeGENIE3.

GEne Network Inference with Ensemble of trees

Bioconductor version: Release (3.22)

This package implements the GENIE3 algorithm for inferring gene regulatory networks from expression data.

Author: Van Anh Huynh-Thu, Sara Aibar, Pierre Geurts

Maintainer: Van Anh Huynh-Thu <vahuynh at uliege.be>

Citation (from within R, entercitation("GENIE3")):

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))    install.packages("BiocManager")BiocManager::install("GENIE3")

For older versions of R, please refer to the appropriateBioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GENIE3")

biocViews	DecisionTree,GeneExpression,GraphAndNetwork,Network,NetworkInference,Regression,Software,SystemsBiology
Version	1.32.0
In Bioconductor since	BioC 3.6 (R-3.4) (8 years)
License	GPL (>= 2)
Depends
Imports	stats,reshape2,dplyr
System Requirements
URL

Suggests	knitr,rmarkdown,foreach,doRNG,doParallel,Biobase,SummarizedExperiment,testthat, methods,BiocStyle
Linking To
Enhances
Depends On Me
Imports Me	BioNERO,MetNet,scGraphVerse,bulkAnalyseR
Suggests Me
Links To Me
Build Report	Build Report

FollowInstallation instructions to use this package in your R session.

Source Package	GENIE3_1.32.0.tar.gz
Windows Binary (x86_64)	GENIE3_1.32.0.zip
macOS Binary (x86_64)	GENIE3_1.32.0.tgz
macOS Binary (arm64)	GENIE3_1.32.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GENIE3
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GENIE3
Bioc Package Browser	https://code.bioconductor.org/browse/GENIE3/
Package Short Url	https://bioconductor.org/packages/GENIE3/
Package Downloads Report	Download Stats