FlowSOM
This is thereleased version of FlowSOM; for the devel version, seeFlowSOM.
Using self-organizing maps for visualization and interpretation of cytometry data
Bioconductor version: Release (3.22)
FlowSOM offers visualization options for cytometry data, by using Self-Organizing Map clustering and Minimal Spanning Trees.
Author: Sofie Van Gassen [aut, cre], Artuur Couckuyt [aut], Katrien Quintelier [aut], Annelies Emmaneel [aut], Britt Callebaut [aut], Yvan Saeys [aut]
Maintainer: Sofie Van Gassen <sofie.vangassen at ugent.be>
citation("FlowSOM")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("FlowSOM")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("FlowSOM")| FlowSOM | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CellBasedAssays,CellBiology,Clustering,FlowCytometry,Software,Visualization |
| Version | 2.18.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (10.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 4.0),igraph |
| Imports | stats, utils,colorRamps,ConsensusClusterPlus,dplyr,flowCore,ggforce,ggnewscale,ggplot2,ggpubr, grDevices,magrittr, methods,rlang,Rtsne,tidyr,BiocGenerics,XML |
| System Requirements | |
| URL | http://www.r-project.orghttp://dambi.ugent.be |
See More
| Suggests | BiocStyle,testthat,CytoML,flowWorkspace,ggrepel,scattermore,pheatmap,ggpointdensity |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | CATALYST,diffcyt |
| Suggests Me | HDCytoData |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | FlowSOM_2.18.0.tar.gz |
| Windows Binary (x86_64) | FlowSOM_2.18.0.zip (64-bit only) |
| macOS Binary (x86_64) | FlowSOM_2.18.0.tgz |
| macOS Binary (arm64) | FlowSOM_2.18.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/FlowSOM |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/FlowSOM |
| Bioc Package Browser | https://code.bioconductor.org/browse/FlowSOM/ |
| Package Short Url | https://bioconductor.org/packages/FlowSOM/ |
| Package Downloads Report | Download Stats |