EBImage
This is thereleased version of EBImage; for the devel version, seeEBImage.
Image processing and analysis toolbox for R
Bioconductor version: Release (3.22)
EBImage provides general purpose functionality for image processing and analysis. In the context of (high-throughput) microscopy-based cellular assays, EBImage offers tools to segment cells and extract quantitative cellular descriptors. This allows the automation of such tasks using the R programming language and facilitates the use of other tools in the R environment for signal processing, statistical modeling, machine learning and visualization with image data.
Author: Andrzej Oleś, Gregoire Pau, Mike Smith, Oleg Sklyar, Wolfgang Huber, with contributions from Joseph Barry and Philip A. Marais
Maintainer: Andrzej Oleś <andrzej.oles at gmail.com>
citation("EBImage")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("EBImage")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("EBImage")| Introduction to EBImage | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Software,Visualization |
| Version | 4.52.0 |
| In Bioconductor since | BioC 1.8 (R-2.3) (19.5 years) |
| License | LGPL |
| Depends | methods |
| Imports | BiocGenerics(>= 0.7.1), graphics, grDevices, stats,abind,tiff,jpeg,png,locfit,fftwtools (>= 0.9-7), utils,htmltools,htmlwidgets,RCurl |
| System Requirements | |
| URL | https://github.com/aoles/EBImage |
| Bug Reports | https://github.com/aoles/EBImage/issues |
See More
| Suggests | BiocStyle,digest,knitr,rmarkdown,shiny |
| Linking To | |
| Enhances | |
| Depends On Me | CRImage,cytomapper,flowcatchR,DonaPLLP2013,furrowSeg,MerfishData,nucim |
| Imports Me | alabaster.sfe,bnbc,Cardinal,CatsCradle,cytoviewer,flowCHIC,heatmaps,imcRtools,MoleculeExperiment,RBioFormats,simpleSeg,sosta,SpatialFeatureExperiment,SpatialOmicsOverlay,synapsis,xenLite,yamss,BioImageDbs, OSTA,AiES,bioimagetools,GoogleImage2Array,LFApp,LOMAR,ProxReg,RockFab,SAFARI,spatialGE |
| Suggests Me | HilbertVis,Voyager,spicyWorkflow,aroma.core,cooltools,crownsegmentr,glow,ijtiff,juicr,lidR,metagear,pliman,rcaiman |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | EBImage_4.52.0.tar.gz |
| Windows Binary (x86_64) | EBImage_4.52.0.zip |
| macOS Binary (x86_64) | EBImage_4.52.0.tgz |
| macOS Binary (arm64) | EBImage_4.52.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/EBImage |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/EBImage |
| Bioc Package Browser | https://code.bioconductor.org/browse/EBImage/ |
| Package Short Url | https://bioconductor.org/packages/EBImage/ |
| Package Downloads Report | Download Stats |