Doscheda
This is thereleased version of Doscheda; for the devel version, seeDoscheda.
A DownStream Chemo-Proteomics Analysis Pipeline
Bioconductor version: Release (3.22)
Doscheda focuses on quantitative chemoproteomics used to determine protein interaction profiles of small molecules from whole cell or tissue lysates using Mass Spectrometry data. The package provides a shiny application to run the pipeline, several visualisations and a downloadable report of an experiment.
Author: Bruno Contrino, Piero Ricchiuto
Maintainer: Bruno Contrino <br1contrino at yahoo.co.uk>
citation("Doscheda")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("Doscheda")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Doscheda")| Doscheda | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport,MassSpectrometry,Normalization,Preprocessing,Proteomics,QualityControl,Regression,Software |
| Version | 1.32.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (8 years) |
| License | GPL-3 |
| Depends | R (>= 3.4) |
| Imports | methods,drc, stats,httr,jsonlite,reshape2,vsn,affy,limma,stringr,ggplot2, graphics, grDevices,calibrate,corrgram,gridExtra,DT,shiny,shinydashboard,readxl,prodlim,matrixStats |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle,knitr,rmarkdown,testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | Doscheda_1.32.0.tar.gz |
| Windows Binary (x86_64) | Doscheda_1.32.0.zip |
| macOS Binary (x86_64) | Doscheda_1.32.0.tgz |
| macOS Binary (arm64) | Doscheda_1.32.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Doscheda |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Doscheda |
| Bioc Package Browser | https://code.bioconductor.org/browse/Doscheda/ |
| Package Short Url | https://bioconductor.org/packages/Doscheda/ |
| Package Downloads Report | Download Stats |