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DirichletMultinomial
This is thereleased version of DirichletMultinomial; for the devel version, seeDirichletMultinomial.
Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data
Bioconductor version: Release (3.22)
Dirichlet-multinomial mixture models can be used to describe variability in microbial metagenomic data. This package is an interface to code originally made available by Holmes, Harris, and Quince, 2012, PLoS ONE 7(2): 1-15, as discussed further in the man page for this package, ?DirichletMultinomial.
Author: Martin Morgan [aut, cre]
ORCID: 0000-0002-5874-8148
Maintainer: Martin Morgan <mtmorgan.xyz at gmail.com>
citation("DirichletMultinomial")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("DirichletMultinomial")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DirichletMultinomial")| DirichletMultinomial for Clustering and Classification of Microbiome Data | HTML | R Script |
| Reference Manual |
Details
| biocViews | Classification,Clustering,ImmunoOncology,Metagenomics,Microbiome,Sequencing,Software |
| Version | 1.52.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (13 years) |
| License | LGPL-3 |
| Depends | S4Vectors,IRanges |
| Imports | stats4, methods,BiocGenerics |
| System Requirements | gsl |
| URL | https://mtmorgan.github.io/DirichletMultinomial/ |
| Bug Reports | https://github.com/mtmorgan/DirichletMultinomial/issues |
See More
| Suggests | lattice, parallel,MASS,RColorBrewer,DT,knitr,rmarkdown,BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | mia,miaViz,TFBSTools |
| Suggests Me | bluster,MicrobiotaProcess |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | DirichletMultinomial_1.52.0.tar.gz |
| Windows Binary (x86_64) | DirichletMultinomial_1.52.0.zip |
| macOS Binary (x86_64) | DirichletMultinomial_1.52.0.tgz |
| macOS Binary (arm64) | DirichletMultinomial_1.52.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/DirichletMultinomial |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DirichletMultinomial |
| Bioc Package Browser | https://code.bioconductor.org/browse/DirichletMultinomial/ |
| Package Short Url | https://bioconductor.org/packages/DirichletMultinomial/ |
| Package Downloads Report | Download Stats |