DExMA
This is thereleased version of DExMA; for the devel version, seeDExMA.
Differential Expression Meta-Analysis
Bioconductor version: Release (3.22)
performing all the steps of gene expression meta-analysis considering the possible existence of missing genes. It provides the necessary functions to be able to perform the different methods of gene expression meta-analysis. In addition, it contains functions to apply quality controls, download GEO datasets and show graphical representations of the results.
Author: Juan Antonio Villatoro-García [aut, cre], Pedro Carmona-Sáez [aut]
Maintainer: Juan Antonio Villatoro-García <juanantoniovillatorogarcia at gmail.com>
citation("DExMA")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("DExMA")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DExMA")| Differential Expression Meta-Analysis with DExMA package | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DifferentialExpression,GeneExpression,QualityControl,Software,StatisticalMethod |
| Version | 1.18.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (4.5 years) |
| License | GPL-2 |
| Depends | R (>= 4.1),DExMAdata |
| Imports | Biobase,GEOquery,impute,limma,pheatmap,plyr,scales,snpStats,sva,swamp, stats, methods, utils,bnstruct,RColorBrewer, grDevices |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle,qpdf,BiocGenerics,RUnit |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | DExMA_1.18.0.tar.gz |
| Windows Binary (x86_64) | DExMA_1.18.0.zip |
| macOS Binary (x86_64) | DExMA_1.18.0.tgz |
| macOS Binary (arm64) | DExMA_1.18.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/DExMA |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DExMA |
| Bioc Package Browser | https://code.bioconductor.org/browse/DExMA/ |
| Package Short Url | https://bioconductor.org/packages/DExMA/ |
| Package Downloads Report | Download Stats |