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CyTOFpower
This is thereleased version of CyTOFpower; for the devel version, seeCyTOFpower.
Power analysis for CyTOF experiments
Bioconductor version: Release (3.22)
This package is a tool to predict the power of CyTOF experiments in the context of differential state analyses. The package provides a shiny app with two options to predict the power of an experiment: i. generation of in-sicilico CyTOF data, using users input ii. browsing in a grid of parameters for which the power was already precomputed.
Author: Anne-Maud Ferreira [cre, aut]
ORCID: 0000-0002-4749-746X, Catherine Blish [aut], Susan Holmes [aut]
Maintainer: Anne-Maud Ferreira <anne-maud.ferreira at stanford.edu>
citation("CyTOFpower")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("CyTOFpower")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CyTOFpower")| Power analysis for CyTOF experiments | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CellBiology,FlowCytometry,SingleCell,Software,StatisticalMethod |
| Version | 1.16.0 |
| In Bioconductor since | BioC 3.14 (R-4.1) (4 years) |
| License | LGPL-3 |
| Depends | R (>= 4.1) |
| Imports | CytoGLMM,diffcyt,DT,dplyr,ggplot2,magrittr, methods,rlang, stats,shiny,shinyFeedback,shinyjs,shinyMatrix,SummarizedExperiment,tibble,tidyr |
| System Requirements | |
| URL |
See More
| Suggests | testthat (>= 3.0.0),BiocStyle,knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | CyTOFpower_1.16.0.tar.gz |
| Windows Binary (x86_64) | CyTOFpower_1.16.0.zip (64-bit only) |
| macOS Binary (x86_64) | CyTOFpower_1.16.0.tgz |
| macOS Binary (arm64) | CyTOFpower_1.16.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/CyTOFpower |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CyTOFpower |
| Bioc Package Browser | https://code.bioconductor.org/browse/CyTOFpower/ |
| Package Short Url | https://bioconductor.org/packages/CyTOFpower/ |
| Package Downloads Report | Download Stats |