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CopyNumberPlots
This is thereleased version of CopyNumberPlots; for the devel version, seeCopyNumberPlots.
Create Copy-Number Plots using karyoploteR functionality
Bioconductor version: Release (3.22)
CopyNumberPlots have a set of functions extending karyoploteRs functionality to create beautiful, customizable and flexible plots of copy-number related data.
Author: Bernat Gel <bgel at igtp.cat> and Miriam Magallon <mmagallon at igtp.cat>
Maintainer: Bernat Gel <bgel at igtp.cat>
Citation (from within R, enter
citation("CopyNumberPlots")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("CopyNumberPlots")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CopyNumberPlots")| CopyNumberPlots vignette | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CopyNumberVariation,Coverage,DNASeq,DataImport,OneChannel,Sequencing,Software,Visualization |
| Version | 1.26.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (6.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.6),karyoploteR |
| Imports | regioneR,IRanges,Rsamtools,SummarizedExperiment,VariantAnnotation, methods, stats,GenomeInfoDb,GenomicRanges,cn.mops,rhdf5, utils |
| System Requirements | |
| URL | https://github.com/bernatgel/CopyNumberPlots |
| Bug Reports | https://github.com/bernatgel/CopyNumberPlots/issues |
See More
| Suggests | BiocStyle,knitr,rmarkdown,panelcn.mops,BSgenome.Hsapiens.UCSC.hg19.masked,DNAcopy,testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | CNVfilteR,CNViz |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | CopyNumberPlots_1.26.0.tar.gz |
| Windows Binary (x86_64) | CopyNumberPlots_1.26.0.zip |
| macOS Binary (x86_64) | CopyNumberPlots_1.26.0.tgz |
| macOS Binary (arm64) | CopyNumberPlots_1.26.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/CopyNumberPlots |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CopyNumberPlots |
| Bioc Package Browser | https://code.bioconductor.org/browse/CopyNumberPlots/ |
| Package Short Url | https://bioconductor.org/packages/CopyNumberPlots/ |
| Package Downloads Report | Download Stats |