CTdata
This is thereleased version of CTdata; for the devel version, seeCTdata.
Data companion to CTexploreR
Bioconductor version: Release (3.22)
Data from publicly available databases (GTEx, CCLE, TCGA and ENCODE) that go with CTexploreR in order to re-define a comprehensive and thoroughly curated list of CT genes and their main characteristics.
Author: Axelle Loriot [aut]
ORCID: 0000-0002-5288-8561, Julie Devis [aut] ORCID: 0000-0001-5525-5666, Anna Diacofotaki [ctb], Charles De Smet [ths], Laurent Gatto [aut, ths, cre] ORCID: 0000-0002-1520-2268
Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>
citation("CTdata")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("CTdata")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CTdata")| Cancer Testis Datasets | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport,Epigenetics,ExperimentHubSoftware,GeneExpression,Software,Transcriptomics |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.17 (R-4.3) (2.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.2) |
| Imports | ExperimentHub, utils |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/UCLouvain-CBIO/CTdata/issues |
See More
| Suggests | testthat (>= 3.0.0),DT,BiocStyle,knitr,rmarkdown,SummarizedExperiment,SingleCellExperiment |
| Linking To | |
| Enhances | |
| Depends On Me | CTexploreR |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | CTdata_1.10.0.tar.gz |
| Windows Binary (x86_64) | CTdata_1.10.0.zip |
| macOS Binary (x86_64) | CTdata_1.10.0.tgz |
| macOS Binary (arm64) | CTdata_1.10.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/CTdata |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CTdata |
| Bioc Package Browser | https://code.bioconductor.org/browse/CTdata/ |
| Package Short Url | https://bioconductor.org/packages/CTdata/ |
| Package Downloads Report | Download Stats |