BiocSet
This is thereleased version of BiocSet; for the devel version, seeBiocSet.
Representing Different Biological Sets
Bioconductor version: Release (3.22)
BiocSet displays different biological sets in a triple tibble format. These three tibbles are `element`, `set`, and `elementset`. The user has the abilty to activate one of these three tibbles to perform common functions from the dplyr package. Mapping functionality and accessing web references for elements/sets are also available in BiocSet.
Author: Kayla Morrell [aut, cre], Martin Morgan [aut], Kevin Rue-Albrecht [ctb], Lluís Revilla Sancho [ctb]
Maintainer: Kayla Morrell <kayla.morrell16 at gmail.com>
citation("BiocSet")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("BiocSet")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BiocSet")| BiocSet: Representing Element Sets in the Tidyverse | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GO,GeneExpression,KEGG,Software |
| Version | 1.24.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (6 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.6),dplyr |
| Imports | methods,tibble, utils,rlang,plyr,S4Vectors,BiocIO,AnnotationDbi,KEGGREST,ontologyIndex,tidyr |
| System Requirements | |
| URL |
See More
| Suggests | GSEABase,airway,org.Hs.eg.db,DESeq2,limma,BiocFileCache,GO.db,testthat,knitr,rmarkdown,BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | RegEnrich |
| Imports Me | sparrow |
| Suggests Me | dearseq |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | BiocSet_1.24.0.tar.gz |
| Windows Binary (x86_64) | BiocSet_1.24.0.zip (64-bit only) |
| macOS Binary (x86_64) | BiocSet_1.24.0.tgz |
| macOS Binary (arm64) | BiocSet_1.24.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BiocSet |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BiocSet |
| Bioc Package Browser | https://code.bioconductor.org/browse/BiocSet/ |
| Package Short Url | https://bioconductor.org/packages/BiocSet/ |
| Package Downloads Report | Download Stats |