| Suggests | Biobase,S4Vectors,IRanges,S4Arrays,SparseArray,DelayedArray,HDF5Array,GenomicRanges,pwalign,Rsamtools,AnnotationDbi,affy,affyPLM,DESeq2,flowClust,MSnbase,annotate,MultiAssayExperiment,RUnit |
| Linking To | |
| Enhances | |
| Depends On Me | ACME,affy,affyPLM,altcdfenvs,amplican,AnnotationDbi,AnnotationForge,AnnotationHub,ATACseqQC,bioassayR,Biobase,Biostrings,bnbc,BSgenome,BSgenomeForge,bsseq,Cardinal,Category,categoryCompare,chipseq,ChIPseqR,ChromHeatMap,cigarillo,clusterExperiment,codelink,consensusDE,consensusSeekeR,CoreGx,CRISPRseek,DelayedArray,ensembldb,ExperimentHub,ExperimentHubData,GDSArray,geneplotter,GenomeInfoDb,genomeIntervals,GenomicAlignments,GenomicFeatures,GenomicFiles,GenomicRanges,GenomicScores,ggbio,graph,GSEABase,GUIDEseq,h5mread,HelloRanges,interactiveDisplay,interactiveDisplayBase,IRanges,ISLET,MBASED,MGnifyR,MineICA,minfi,MLInterfaces,MotifDb,mpra,MSnbase,multtest,NADfinder,ngsReports,oligo,OrganismDbi,plyranges,pwalign,PWMEnrich,QSutils,RareVariantVis,Rarr,REDseq,RnBeads,RPA,rsbml,S4Arrays,S4Vectors,Seqinfo,ShortRead,SparseArray,spqn,StructuralVariantAnnotation,svaNUMT,svaRetro,TEQC,tigre,topdownr,topGO,txdbmaker,UNDO,updateObject,VanillaICE,VariantAnnotation,VariantFiltering,VCFArray,XVector,yamss,ChAMPdata,liftOver,rsolr |
| Imports Me | a4Preproc,affycoretools,affylmGUI,alabaster.bumpy,alabaster.files,alabaster.matrix,alabaster.ranges,alabaster.se,AllelicImbalance,annmap,annotate,AnnotationHubData,ASpli,ATACseqTFEA,atena,AUCell,autonomics,bambu,bamsignals,BASiCS,batchelor,beachmat,bigmelon,Bioc.gff,BiocBook,biocGraph,BiocHail,BiocIO,BiocSingular,biotmle,biovizBase,biscuiteer,BiSeq,breakpointR,BrowserViz,bumphunter,BUSpaRse,CAGEfightR,CAGEr,casper,celaref,CellBench,CellMixS,CellTrails,cfDNAPro,cghMCR,ChemmineOB,ChemmineR,chipenrich,ChIPpeakAnno,ChIPseeker,chipseq,chromVAR,cicero,CircSeqAlignTk,CleanUpRNAseq,clusterSeq,cn.mops,CNEr,CNVPanelizer,CNVRanger,COCOA,cola,compEpiTools,CompoundDb,concordexR,crisprBase,crisprBowtie,crisprBwa,crisprDesign,crisprScore,crisprShiny,crisprViz,crlmm,csaw,CTexploreR,CuratedAtlasQueryR,cydar,dada2,dagLogo,DAMEfinder,dandelionR,ddCt,decompTumor2Sig,deconvR,DegCre,DEGreport,DelayedDataFrame,demuxSNP,derfinder,DEScan2,DESeq2,DESpace,destiny,DEWSeq,DEXSeq,DFplyr,diffcoexp,diffHic,dinoR,DirichletMultinomial,DiscoRhythm,DNAfusion,dreamlet,DRIMSeq,DropletUtils,DrugVsDisease,easyRNASeq,EBImage,EDASeq,eiR,eisaR,ELViS,enhancerHomologSearch,EnrichDO,epialleleR,EpiCompare,epimutacions,epistack,EpiTxDb,epivizrChart,epivizrStandalone,esATAC,FamAgg,fastseg,ffpe,FindIT2,FLAMES,flowBin,flowClust,flowCore,flowFP,FlowSOM,flowSpecs,flowStats,flowWorkspace,fmcsR,FRASER,frma,GA4GHclient,GA4GHshiny,gcapc,gDNAx,geneAttribution,geneClassifiers,GENESIS,GenomAutomorphism,GenomicAlignments,GenomicInteractions,GenomicPlot,GenomicTuples,geomeTriD,GeomxTools,glmGamPoi,gmapR,gmoviz,goseq,GOTHiC,GSVA,Gviz,HDF5Array,heatmaps,hermes,HicAggR,HiCDOC,HiCExperiment,HiContacts,HiCParser,HiLDA,hopach,icetea,igvR,igvShiny,IHW,infercnv,INSPEcT,intansv,InteractionSet,IntEREst,IONiseR,iSEE,IsoformSwitchAnalyzeR,IVAS,KCsmart,ldblock,lefser,lemur,linkSet,lisaClust,LOLA,maaslin3,mariner,maser,MAST,matter,MEAL,meshr,MetaboAnnotation,metaMS,metaseqR2,methInheritSim,MethylAid,methylPipe,methylumi,mia,miaViz,miloR,mimager,MinimumDistance,MIRA,MiRaGE,missMethyl,mist,mobileRNA,Modstrings,mogsa,monaLisa,monocle,Moonlight2R,Motif2Site,motifbreakR,msa,MsBackendSql,MsExperiment,MSnID,MultiAssayExperiment,multicrispr,MultiDataSet,multiMiR,MultimodalExperiment,mumosa,MutationalPatterns,mutscan,mzR,NanoStringNCTools,nearBynding,notame,notameStats,notameViz,npGSEA,nucleR,oligoClasses,openCyto,openPrimeR,ORFik,OUTRIDER,parglms,pcaMethods,PDATK,pdInfoBuilder,PharmacoGx,PhIPData,PhosR,phyloseq,piano,PIPETS,plyinteractions,podkat,pram,primirTSS,proDA,profileScoreDist,pRoloc,pRolocGUI,ProteoDisco,PSMatch,PureCN,QDNAseq,QFeatures,qPLEXanalyzer,qsea,QTLExperiment,QuasR,R3CPET,RadioGx,raer,RaggedExperiment,ramr,ramwas,RCAS,RcisTarget,RCy3,RCyjs,recoup,ReducedExperiment,REMP,ReportingTools,RGSEA,RiboCrypt,RiboDiPA,RiboProfiling,ribosomeProfilingQC,RJMCMCNucleosomes,rnaEditr,RNAmodR,RNAmodR.AlkAnilineSeq,RNAmodR.ML,RNAmodR.RiboMethSeq,RNAseqCovarImpute,roar,Rqc,rqubic,Rsamtools,rsbml,rScudo,RTCGAToolbox,rtracklayer,SanityR,saseR,SC3,SCArray.sat,scater,scDblFinder,scDotPlot,scmap,scmeth,SCnorm,SCOPE,scPipe,scran,scruff,scuttle,SeqVarTools,sevenC,SGSeq,SharedObject,shinyDSP,shinyMethyl,signatureSearch,signeR,signifinder,simPIC,SingleCellExperiment,SingleMoleculeFootprinting,sitadela,Site2Target,SNPhood,snpStats,sparrow,SpatialExperiment,SpatialFeatureExperiment,Spectra,splatter,SpliceWiz,SplicingGraphs,SplineDV,sRACIPE,sscu,StabMap,standR,strandCheckR,Streamer,Structstrings,SummarizedExperiment,SVP,SynMut,systemPipeR,tadar,TAPseq,target,TCGAutils,TCseq,TENxIO,TFBSTools,tidySpatialExperiment,ToxicoGx,trackViewer,transcriptR,transite,TreeSummarizedExperiment,tRNA,tRNAscanImport,TVTB,txcutr,Ularcirc,UMI4Cats,unifiedWMWqPCR,UniProt.ws,universalmotif,uSORT,VariantTools,velociraptor,VisiumIO,visiumStitched,wavClusteR,weitrix,xcms,XDE,XeniumIO,XVector,zitools,CENTREannotation,SNPlocs.Hsapiens.dbSNP144.GRCh37,SNPlocs.Hsapiens.dbSNP144.GRCh38,SNPlocs.Hsapiens.dbSNP149.GRCh38,SNPlocs.Hsapiens.dbSNP150.GRCh38,SNPlocs.Hsapiens.dbSNP155.GRCh37,SNPlocs.Hsapiens.dbSNP155.GRCh38,XtraSNPlocs.Hsapiens.dbSNP144.GRCh37,XtraSNPlocs.Hsapiens.dbSNP144.GRCh38,CENTREprecomputed,chipenrich.data,curatedOvarianData,gDNAinRNAseqData,homosapienDEE2CellScore,IHWpaper,KEGGandMetacoreDzPathwaysGEO,KEGGdzPathwaysGEO,microbiomeDataSets,MouseGastrulationData,MouseThymusAgeing,raerdata,scRNAseq,spatialLIBD,systemPipeRdata,TENxBUSData,VariantToolsData,ExpHunterSuite,GeoMxWorkflows,crispRdesignR,DCLEAR,geno2proteo,HiCociety,hicream,locuszoomr,RNAseqQC,scPOEM,Signac,TaxaNorm,toxpiR,treediff |
| Suggests Me | acde,adverSCarial,aggregateBioVar,AIMS,AlphaMissenseR,ASSET,ASURAT,BaalChIP,baySeq,bigmelon,BiocParallel,BiocStyle,biocViews,biosigner,BiRewire,BLMA,BloodGen3Module,bnem,borealis,BUScorrect,BUSseq,CAFE,CAMERA,CausalR,ccrepe,CDI,cellmigRation,CexoR,chihaya,ChIPanalyser,ChIPXpress,CHRONOS,cleanUpdTSeq,clipper,ClustAll,clustComp,CNORfeeder,CNORfuzzy,consensus,cosmiq,COSNet,cpvSNP,crumblr,cypress,DEsubs,DExMA,DMRcaller,DMRcate,DNAcycP2,DspikeIn,EnhancedVolcano,ENmix,EpiMix,epiNEM,EventPointer,fCCAC,fcScan,fgga,FGNet,flowCut,flowTime,fmrs,GateFinder,gCrisprTools,gdsfmt,GEM,GeneNetworkBuilder,GeneOverlap,geneplast,geneRxCluster,geNetClassifier,genomation,GEOquery,GeoTcgaData,ginmappeR,GMRP,GOstats,GrafGen,GreyListChIP,GWASTools,h5vc,Harman,HiCDCPlus,hierGWAS,HIREewas,hypergraph,iCARE,iClusterPlus,IFAA,illuminaio,immunotation,INPower,IPO,kebabs,KEGGREST,LACE,MAGAR,magpie,massiR,MatrixQCvis,MatrixRider,MBttest,mCSEA,Mergeomics,MetaboSignal,metagene2,metagenomeSeq,MetCirc,methylCC,methylInheritance,MetNet,microbiome,miRBaseConverter,miRcomp,mirIntegrator,mnem,mosbi,MOSClip,motifStack,MsQuality,multiClust,MultiMed,MultiRNAflow,MungeSumstats,MWASTools,ncRNAtools,nempi,NetSAM,nondetects,nucleoSim,omicsGMF,OMICsPCA,OncoScore,PAA,panelcn.mops,Path2PPI,pathMED,PathNet,pathview,pepXMLTab,phenomis,powerTCR,proBAMr,qpgraph,quantro,RBGL,rBiopaxParser,RbowtieCuda,rcellminer,rCGH,REBET,RESOLVE,rfaRm,RGraph2js,Rgraphviz,rgsepd,riboSeqR,ROntoTools,ropls,ROSeq,RTN,RTNduals,RTNsurvival,rTRM,SAIGEgds,sangerseqR,SANTA,sarks,SCArray,scDataviz,scLANE,scp,screenCounter,scry,segmentSeq,SeqArray,seqPattern,SICtools,sigFeature,sigsquared,SIMAT,similaRpeak,SIMLR,singleCellTK,SingleR,slingshot,SNPRelate,SparseSignatures,specL,STATegRa,STRINGdb,SUITOR,systemPipeTools,TCC,TFEA.ChIP,TIN,transcriptogramer,traseR,TreeAndLeaf,tripr,tRNAdbImport,TRONCO,Uniquorn,variancePartition,VERSO,XAItest,xcore,zenith,ENCODExplorerData,geneplast.data,ConnectivityMap,FieldEffectCrc,grndata,HarmanData,healthyControlsPresenceChecker,microRNAome,RegParallel,scMultiome,sesameData,xcoredata,adjclust,aroma.affymetrix,ggpicrust2,gkmSVM,GSEMA,inDAGO,MarZIC,pagoda2,Platypus,polyRAD,Rediscover,Seurat |
| Links To Me | |
| Build Report | Build Report |
ORCID: 0009-0002-8272-4522, Laurent Gatto [ctb]