BG2
This is thereleased version of BG2; for the devel version, seeBG2.
Performs Bayesian GWAS analysis for non-Gaussian data using BG2
DOI: 10.18129/B9.bioc.BG2
Bioconductor version: Release (3.22)
This package is built to perform GWAS analysis for non-Gaussian data using BG2. The BG2 method uses penalized quasi-likelihood along with nonlocal priors in a two step manner to identify SNPs in GWAS analysis. The research related to this package was supported in part by National Science Foundation awards DMS 1853549 and DMS 2054173.
Author: Jacob Williams [aut, cre]
ORCID: 0000-0002-6425-1365, Shuangshuang Xu [aut], Marco Ferreira [aut] ORCID: 0000-0002-4705-5661
Maintainer: Jacob Williams <jwilliams at vt.edu>
citation("BG2")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("BG2")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BG2")| BG2 | HTML | R Script |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | AssayDomain,Bayesian,GenomeWideAssociation,SNP,Software |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.17 (R-4.3) (2.5 years) |
| License | GPL-3 + fileLICENSE |
| Depends | R (>= 4.2.0) |
| Imports | GA (>= 3.2),caret (>= 6.0-86),memoise (>= 1.1.0),Matrix (>= 1.2-18),MASS (>= 7.3-58.1), stats (>= 4.2.2) |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle,knitr,rmarkdown,formatR,rrBLUP,testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | BG2_1.10.0.tar.gz |
| Windows Binary (x86_64) | BG2_1.10.0.zip |
| macOS Binary (x86_64) | BG2_1.10.0.tgz |
| macOS Binary (arm64) | BG2_1.10.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BG2 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BG2 |
| Bioc Package Browser | https://code.bioconductor.org/browse/BG2/ |
| Package Short Url | https://bioconductor.org/packages/BG2/ |
| Package Downloads Report | Download Stats |