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AllelicImbalance
This is thereleased version of AllelicImbalance; for the devel version, seeAllelicImbalance.
Investigates Allele Specific Expression
Bioconductor version: Release (3.22)
Provides a framework for allelic specific expression investigation using RNA-seq data.
Author: Jesper R Gadin, Lasse Folkersen
Maintainer: Jesper R Gadin <j.r.gadin at gmail.com>
Citation (from within R, enter
citation("AllelicImbalance")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("AllelicImbalance")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AllelicImbalance")| AllelicImbalance Vignette | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Genetics,Infrastructure,Sequencing,Software |
| Version | 1.48.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (12 years) |
| License | GPL-3 |
| Depends | R (>= 4.0.0), grid,GenomicRanges(>= 1.31.8),SummarizedExperiment(>= 0.2.0),GenomicAlignments(>= 1.15.6) |
| Imports | methods,BiocGenerics,AnnotationDbi,BSgenome(>= 1.47.3),VariantAnnotation(>= 1.25.11),Biostrings(>= 2.47.6),S4Vectors(>= 0.17.25),IRanges(>= 2.13.12),Rsamtools(>= 1.99.3),GenomicFeatures(>= 1.31.3),Gviz,lattice,latticeExtra,gridExtra,seqinr,GenomeInfoDb,nlme |
| System Requirements | |
| URL | https://github.com/pappewaio/AllelicImbalance |
| Bug Reports | https://github.com/pappewaio/AllelicImbalance/issues |
See More
| Suggests | testthat,org.Hs.eg.db,TxDb.Hsapiens.UCSC.hg19.knownGene,SNPlocs.Hsapiens.dbSNP144.GRCh37,BiocStyle,knitr,rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | AllelicImbalance_1.48.0.tar.gz |
| Windows Binary (x86_64) | AllelicImbalance_1.48.0.zip |
| macOS Binary (x86_64) | AllelicImbalance_1.48.0.tgz |
| macOS Binary (arm64) | AllelicImbalance_1.48.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/AllelicImbalance |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/AllelicImbalance |
| Bioc Package Browser | https://code.bioconductor.org/browse/AllelicImbalance/ |
| Package Short Url | https://bioconductor.org/packages/AllelicImbalance/ |
| Package Downloads Report | Download Stats |