celldex
This is thereleased version of celldex; for the devel version, seecelldex.
Index of Reference Cell Type Datasets
Bioconductor version: Release (3.22)
Provides a collection of reference expression datasets with curated cell type labels, for use in procedures like automated annotation of single-cell data or deconvolution of bulk RNA-seq.
Author: Dvir Aran [aut], Aaron Lun [aut, cre, cph], Daniel Bunis [aut], Jared Andrews [aut], Friederike Dündar [aut]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
citation("celldex")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("celldex")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("celldex")| Cell type references | HTML | R Script |
| Reference Manual |
Details
| biocViews | ExperimentData,ExperimentHub,ExpressionData,RNASeqData,SequencingData |
| Version | 1.20.0 |
| License | GPL-3 |
| Depends | SummarizedExperiment |
| Imports | utils, methods,Matrix,ExperimentHub,AnnotationHub,AnnotationDbi,S4Vectors,DelayedArray,DelayedMatrixStats,gypsum,alabaster.base,alabaster.matrix,alabaster.se,DBI,RSQLite,jsonlite |
| System Requirements | |
| URL | https://github.com/LTLA/celldex |
| Bug Reports | https://support.bioconductor.org/ |
See More
| Suggests | testthat,knitr,rmarkdown,BiocStyle,DT,jsonvalidate,BiocManager,ensembldb |
| Linking To | |
| Enhances | |
| Depends On Me | OSCA.basic, OSCA.workflows, SingleRBook |
| Imports Me | singleCellTK,scPipeline |
| Suggests Me | ontoProc,scDiagnostics,scGraphVerse,SingleR,sketchR,tidySingleCellExperiment |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | celldex_1.20.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/celldex |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/celldex |
| Package Short Url | https://bioconductor.org/packages/celldex/ |
| Package Downloads Report | Download Stats |