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wateRmelon
This is thereleased version of wateRmelon; for the devel version, seewateRmelon.
Illumina DNA methylation array normalization and metrics
Bioconductor version: Release (3.22)
15 flavours of betas and three performance metrics, with methods for objects produced by methylumi and minfi packages.
Author: Leo C Schalkwyk [cre, aut], Tyler J Gorrie-Stone [aut], Ruth Pidsley [aut], Chloe CY Wong [aut], Nizar Touleimat [ctb], Matthieu Defrance [ctb], Andrew Teschendorff [ctb], Jovana Maksimovic [ctb], Louis Y El Khoury [ctb], Yucheng Wang [ctb], Alexandria Andrayas [ctb]
Maintainer: Leo C Schalkwyk <lschal at essex.ac.uk>
citation("wateRmelon")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("wateRmelon")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("wateRmelon")| wateRmelon User's Guide | HTML | R Script |
| Reference Manual |
Details
| biocViews | DNAMethylation,Microarray,Preprocessing,QualityControl,Software,TwoChannel |
| Version | 2.16.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (12.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.5.0),Biobase,limma, methods,matrixStats,methylumi,lumi,ROC,IlluminaHumanMethylation450kanno.ilmn12.hg19,illuminaio |
| Imports | Biobase |
| System Requirements | |
| URL |
See More
| Suggests | RPMM,IlluminaHumanMethylationEPICanno.ilm10b2.hg19,BiocStyle,knitr,rmarkdown,IlluminaHumanMethylationEPICmanifest,irlba,FlowSorted.Blood.EPIC,FlowSorted.Blood.450k,preprocessCore |
| Linking To | |
| Enhances | minfi |
| Depends On Me | bigmelon,skewr |
| Imports Me | ChAMP,MEAT |
| Suggests Me | RnBeads |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | wateRmelon_2.16.0.tar.gz |
| Windows Binary (x86_64) | wateRmelon_2.16.0.zip |
| macOS Binary (x86_64) | wateRmelon_2.16.0.tgz |
| macOS Binary (arm64) | wateRmelon_2.16.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/wateRmelon |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/wateRmelon |
| Bioc Package Browser | https://code.bioconductor.org/browse/wateRmelon/ |
| Package Short Url | https://bioconductor.org/packages/wateRmelon/ |
| Package Downloads Report | Download Stats |