- Home
- Bioconductor 3.22
- Software Packages
- tidySpatialExperiment
tidySpatialExperiment
This is thereleased version of tidySpatialExperiment; for the devel version, seetidySpatialExperiment.
SpatialExperiment with tidy principles
Bioconductor version: Release (3.22)
tidySpatialExperiment provides a bridge between the SpatialExperiment package and the tidyverse ecosystem. It creates an invisible layer that allows you to interact with a SpatialExperiment object as if it were a tibble; enabling the use of functions from dplyr, tidyr, ggplot2 and plotly. But, underneath, your data remains a SpatialExperiment object.
Author: William Hutchison [aut, cre]
ORCID: 0009-0001-6242-4269, Stefano Mangiola [aut]
Maintainer: William Hutchison <hutchison.w at wehi.edu.au>
citation("tidySpatialExperiment")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("tidySpatialExperiment")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("tidySpatialExperiment")| Overview | HTML | R Script |
| Reference Manual |
Details
| biocViews | GeneExpression,Infrastructure,RNASeq,Sequencing,SingleCell,Software,Spatial,Transcriptomics |
| Version | 1.6.2 |
| In Bioconductor since | BioC 3.19 (R-4.4) (1.5 years) |
| License | GPL (>= 3) |
| Depends | R (>= 4.3.0),SpatialExperiment,tidySingleCellExperiment,ttservice |
| Imports | SummarizedExperiment,SingleCellExperiment,BiocGenerics,S4Vectors, methods, utils,pkgconfig,tibble,dplyr,tidyr,ggplot2 (>= 4.0.0),plotly,rlang,purrr,stringr,vctrs,tidyselect,pillar,cli,fansi,lifecycle,magick,tidygate (>= 1.0.13),shiny |
| System Requirements | |
| URL | https://github.com/william-hutchison/tidySpatialExperimenthttps://william-hutchison.github.io/tidySpatialExperiment/ |
| Bug Reports | https://github.com/william-hutchison/tidySpatialExperiment/issues |
See More
| Suggests | BiocStyle,testthat,knitr,markdown,scater,igraph,cowplot,DropletUtils,tidySummarizedExperiment |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | tidyomics |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | tidySpatialExperiment_1.6.2.tar.gz |
| Windows Binary (x86_64) | tidySpatialExperiment_1.6.1.zip |
| macOS Binary (x86_64) | tidySpatialExperiment_1.6.2.tgz |
| macOS Binary (arm64) | tidySpatialExperiment_1.6.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/tidySpatialExperiment |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/tidySpatialExperiment |
| Bioc Package Browser | https://code.bioconductor.org/browse/tidySpatialExperiment/ |
| Package Short Url | https://bioconductor.org/packages/tidySpatialExperiment/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.22 | Source Archive |