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tRNAscanImport
This is thereleased version of tRNAscanImport; for the devel version, seetRNAscanImport.
Importing a tRNAscan-SE result file as GRanges object
Bioconductor version: Release (3.22)
The package imports the result of tRNAscan-SE as a GRanges object.
Author: Felix G.M. Ernst [aut, cre]
ORCID: 0000-0001-5064-0928
Maintainer: Felix G.M. Ernst <felix.gm.ernst at outlook.com>
Citation (from within R, enter
citation("tRNAscanImport")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("tRNAscanImport")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("tRNAscanImport")| tRNAscanImport | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataImport,Preprocessing,Software,Visualization,WorkflowStep |
| Version | 1.30.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (7.5 years) |
| License | GPL-3 + fileLICENSE |
| Depends | R (>= 3.5),GenomicRanges,tRNA |
| Imports | methods,stringr,BiocGenerics,Biostrings,Structstrings,S4Vectors,IRanges,XVector,Seqinfo,rtracklayer,BSgenome,Rsamtools |
| System Requirements | |
| URL | https://github.com/FelixErnst/tRNAscanImport |
| Bug Reports | https://github.com/FelixErnst/tRNAscanImport/issues |
See More
| Suggests | BiocStyle,knitr,rmarkdown,testthat,ggplot2,BSgenome.Scerevisiae.UCSC.sacCer3 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | Structstrings,tRNA |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | tRNAscanImport_1.30.0.tar.gz |
| Windows Binary (x86_64) | tRNAscanImport_1.30.0.zip |
| macOS Binary (x86_64) | tRNAscanImport_1.30.0.tgz |
| macOS Binary (arm64) | tRNAscanImport_1.30.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/tRNAscanImport |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/tRNAscanImport |
| Bioc Package Browser | https://code.bioconductor.org/browse/tRNAscanImport/ |
| Package Short Url | https://bioconductor.org/packages/tRNAscanImport/ |
| Package Downloads Report | Download Stats |