scTGIF
This is thereleased version of scTGIF; for the devel version, seescTGIF.
Cell type annotation for unannotated single-cell RNA-Seq data
Bioconductor version: Release (3.22)
scTGIF connects the cells and the related gene functions without cell type label.
Author: Koki Tsuyuzaki [aut, cre]
Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>
Citation (from within R, enter
citation("scTGIF")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("scTGIF")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scTGIF")| scTGIF | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DimensionReduction,GeneExpression,QualityControl,SingleCell,Software |
| Version | 1.24.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (6 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.6.0) |
| Imports | GSEABase,Biobase,SingleCellExperiment,BiocStyle,plotly,tagcloud,rmarkdown,Rcpp, grDevices, graphics, utils,knitr,S4Vectors,SummarizedExperiment,RColorBrewer,nnTensor, methods,scales,msigdbr,schex,tibble,ggplot2,igraph |
| System Requirements | |
| URL |
See More
| Suggests | testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | scTensor |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | scTGIF_1.24.0.tar.gz |
| Windows Binary (x86_64) | scTGIF_1.24.0.zip |
| macOS Binary (x86_64) | scTGIF_1.24.0.tgz |
| macOS Binary (arm64) | scTGIF_1.24.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/scTGIF |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/scTGIF |
| Bioc Package Browser | https://code.bioconductor.org/browse/scTGIF/ |
| Package Short Url | https://bioconductor.org/packages/scTGIF/ |
| Package Downloads Report | Download Stats |