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pathRender
This is thereleased version of pathRender; for the devel version, seepathRender.
Render molecular pathways
Bioconductor version: Release (3.22)
build graphs from pathway databases, render them by Rgraphviz.
Author: Li Long <lilong at isb-sib.ch>
Maintainer: Vince Carey <stvjc at channing.harvard.edu>
Citation (from within R, enter
citation("pathRender")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("pathRender")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pathRender")| pathRender overview | R Script | |
| pathway graphs colored by expression map | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GraphAndNetwork,Pathways,Software,Visualization |
| Version | 1.78.0 |
| In Bioconductor since | BioC 1.8 (R-2.3) (19.5 years) |
| License | LGPL |
| Depends | graph,Rgraphviz,RColorBrewer,cMAP,AnnotationDbi, methods, stats4 |
| Imports | |
| System Requirements | |
| URL | http://www.bioconductor.org |
See More
| Suggests | ALL,hgu95av2.db |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | pathRender_1.78.0.tar.gz |
| Windows Binary (x86_64) | pathRender_1.78.0.zip |
| macOS Binary (x86_64) | pathRender_1.78.0.tgz |
| macOS Binary (arm64) | pathRender_1.78.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/pathRender |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/pathRender |
| Bioc Package Browser | https://code.bioconductor.org/browse/pathRender/ |
| Package Short Url | https://bioconductor.org/packages/pathRender/ |
| Package Downloads Report | Download Stats |