miaDash
This is thereleased version of miaDash; for the devel version, seemiaDash.
Dashboard for the interactive analysis and exploration of microbiome data
Bioconductor version: Release (3.22)
miaDash provides a Graphical User Interface for the exploration of microbiome data. This way, no knowledge of programming is required to perform analyses. Datasets can be imported, manipulated, analysed and visualised with a user-friendly interface.
Author: Giulio Benedetti [aut, cre]
ORCID: 0000-0002-8732-7692, Akewak Jeba [ctb] ORCID: 0009-0007-1347-7552, Leo Lahti [aut] ORCID: 0000-0001-5537-637X
Maintainer: Giulio Benedetti <giulio.benedetti at utu.fi>
citation("miaDash")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("miaDash")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("miaDash")| miaDash | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport,GUI,Microbiome,ShinyApps,Software,Visualization |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.21 (R-4.5) (0.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.4.0),iSEE(>= 2.19.4),shiny |
| Imports | ape,bluster,htmltools,iSEEtree(>= 1.1.4),mia,rintrojs,scater,scuttle,shinydashboard,shinyjs,shinyWidgets,S4Vectors,SingleCellExperiment,SummarizedExperiment,TreeSummarizedExperiment, utils,vegan |
| System Requirements | |
| URL | https://github.com/microbiome/miaDash |
| Bug Reports | https://github.com/microbiome/miaDash/issues |
See More
| Suggests | BiocStyle,knitr,philr,remotes,rmarkdown,testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | miaDash_1.2.0.tar.gz |
| Windows Binary (x86_64) | miaDash_1.2.0.zip |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/miaDash |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/miaDash |
| Bioc Package Browser | https://code.bioconductor.org/browse/miaDash/ |
| Package Short Url | https://bioconductor.org/packages/miaDash/ |
| Package Downloads Report | Download Stats |