gwascat
This is thereleased version of gwascat; for the devel version, seegwascat.
representing and modeling data in the EMBL-EBI GWAS catalog
Bioconductor version: Release (3.22)
Represent and model data in the EMBL-EBI GWAS catalog.
Author: VJ Carey <stvjc at channing.harvard.edu>
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
Citation (from within R, enter
citation("gwascat")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("gwascat")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gwascat")| gwascat -- GRanges for GWAS hits in EBI catalog | HTML | R Script |
| gwascat: structuring and querying the NHGRI GWAS catalog | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Genetics,Software |
| Version | 2.42.0 |
| In Bioconductor since | BioC 2.10 (R-2.15) (13.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.1.0), methods |
| Imports | S4Vectors(>= 0.9.25),IRanges,Seqinfo,GenomeInfoDb,GenomicRanges(>= 1.29.6),GenomicFeatures,readr,Biostrings,AnnotationDbi,BiocFileCache,snpStats,VariantAnnotation,AnnotationHub,data.table,tibble |
| System Requirements | |
| URL |
See More
| Suggests | DO.db,DT,knitr,RBGL,testthat,rmarkdown,dplyr,Gviz,Rsamtools,rtracklayer,graph,ggbio,DelayedArray,TxDb.Hsapiens.UCSC.hg19.knownGene,org.Hs.eg.db,BiocStyle |
| Linking To | |
| Enhances | SNPlocs.Hsapiens.dbSNP144.GRCh37 |
| Depends On Me | vtpnet,liftOver |
| Imports Me | circRNAprofiler |
| Suggests Me | GenomicScores,hmdbQuery,ldblock,parglms,TFutils,grasp2db |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | gwascat_2.42.0.tar.gz |
| Windows Binary (x86_64) | gwascat_2.42.0.zip (64-bit only) |
| macOS Binary (x86_64) | gwascat_2.42.0.tgz |
| macOS Binary (arm64) | gwascat_2.42.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/gwascat |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/gwascat |
| Bioc Package Browser | https://code.bioconductor.org/browse/gwascat/ |
| Package Short Url | https://bioconductor.org/packages/gwascat/ |
| Package Downloads Report | Download Stats |