biocGraph
This is thereleased version of biocGraph; for the devel version, seebiocGraph.
Graph examples and use cases in Bioinformatics
Bioconductor version: Release (3.22)
This package provides examples and code that make use of the different graph related packages produced by Bioconductor.
Author: Li Long <li.long at isb-sib.ch>, Robert Gentleman <rgentlem at fhcrc.org>, Seth Falcon <sethf at fhcrc.org> Florian Hahne <fhahne at fhcrc.org>
Maintainer: Florian Hahne <florian.hahne at novartis.com>
citation("biocGraph")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("biocGraph")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("biocGraph")| Examples of plotting graphs Using Rgraphviz | R Script | |
| HOWTO layout pathways | R Script | |
| Reference Manual |
Details
| biocViews | GraphAndNetwork,Software,Visualization |
| Version | 1.72.0 |
| In Bioconductor since | BioC 2.1 (R-2.6) (18 years) |
| License | Artistic-2.0 |
| Depends | Rgraphviz,graph |
| Imports | Rgraphviz,geneplotter,graph,BiocGenerics, methods |
| System Requirements | |
| URL |
See More
| Suggests | fibroEset,geneplotter,hgu95av2.db |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | EnrichmentBrowser |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | biocGraph_1.72.0.tar.gz |
| Windows Binary (x86_64) | biocGraph_1.72.0.zip |
| macOS Binary (x86_64) | biocGraph_1.72.0.tgz |
| macOS Binary (arm64) | biocGraph_1.72.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/biocGraph |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/biocGraph |
| Bioc Package Browser | https://code.bioconductor.org/browse/biocGraph/ |
| Package Short Url | https://bioconductor.org/packages/biocGraph/ |
| Package Downloads Report | Download Stats |